Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0676 and Atu0677 are separated by 4 nucleotides Atu0677 and Atu0678 are separated by 16 nucleotides Atu0678 and Atu0679 overlap by 4 nucleotides Atu0679 and Atu0680 are separated by 64 nucleotides
Atu0676: Atu0676 - histidyl-tRNA synthetase, at 670,894 to 672,417
Atu0676
Atu0677: Atu0677 - hypothetical protein, at 672,422 to 672,790
Atu0677
Atu0678: Atu0678 - histidyl-tRNA synthetase, at 672,807 to 673,934
Atu0678
Atu0679: Atu0679 - ATP phosphoribosyltransferase, at 673,931 to 674,623
Atu0679
Atu0680: Atu0680 - hypothetical protein, at 674,688 to 675,179
Atu0680
Position (kb) 672
673
674 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 672.381 kb on + strand at 672.518 kb on - strand, within Atu0677 at 672.531 kb on - strand, within Atu0677 at 672.698 kb on - strand, within Atu0677 at 672.893 kb on + strand at 672.894 kb on - strand at 672.987 kb on - strand, within Atu0678 at 673.348 kb on + strand, within Atu0678 at 673.375 kb on - strand, within Atu0678 at 673.417 kb on + strand, within Atu0678 at 673.548 kb on + strand, within Atu0678 at 673.574 kb on + strand, within Atu0678 at 673.582 kb on - strand, within Atu0678 at 673.593 kb on + strand, within Atu0678 at 673.614 kb on - strand, within Atu0678 at 673.697 kb on - strand, within Atu0678 at 673.802 kb on - strand, within Atu0678 at 673.901 kb on + strand at 673.929 kb on + strand at 673.993 kb on - strand at 674.162 kb on + strand, within Atu0679 at 674.162 kb on + strand, within Atu0679 at 674.170 kb on - strand, within Atu0679 at 674.255 kb on + strand, within Atu0679 at 674.286 kb on - strand, within Atu0679 at 674.387 kb on - strand, within Atu0679 at 674.407 kb on - strand, within Atu0679 at 674.428 kb on + strand, within Atu0679 at 674.473 kb on - strand, within Atu0679 at 674.686 kb on + strand at 674.759 kb on + strand, within Atu0680 at 674.767 kb on - strand, within Atu0680 at 674.767 kb on - strand, within Atu0680 at 674.831 kb on - strand, within Atu0680 at 674.852 kb on + strand, within Atu0680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 672,381 + +0.4 672,518 - Atu0677 0.26 +0.2 672,531 - Atu0677 0.30 +0.2 672,698 - Atu0677 0.75 -0.3 672,893 + -0.6 672,894 - -4.1 672,987 - Atu0678 0.16 -6.8 673,348 + Atu0678 0.48 -2.9 673,375 - Atu0678 0.50 -4.3 673,417 + Atu0678 0.54 -2.1 673,548 + Atu0678 0.66 -0.2 673,574 + Atu0678 0.68 -1.8 673,582 - Atu0678 0.69 -3.2 673,593 + Atu0678 0.70 -2.7 673,614 - Atu0678 0.72 -3.6 673,697 - Atu0678 0.79 -4.4 673,802 - Atu0678 0.88 -2.6 673,901 + -1.4 673,929 + -0.3 673,993 - -2.2 674,162 + Atu0679 0.33 -3.9 674,162 + Atu0679 0.33 -3.5 674,170 - Atu0679 0.34 -1.8 674,255 + Atu0679 0.47 -3.1 674,286 - Atu0679 0.51 -5.1 674,387 - Atu0679 0.66 -2.6 674,407 - Atu0679 0.69 -2.9 674,428 + Atu0679 0.72 -4.6 674,473 - Atu0679 0.78 -2.6 674,686 + -0.9 674,759 + Atu0680 0.14 -0.8 674,767 - Atu0680 0.16 +0.8 674,767 - Atu0680 0.16 -2.4 674,831 - Atu0680 0.29 +0.1 674,852 + Atu0680 0.33 +0.1
Or see this region's nucleotide sequence