Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24730

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22805 and AMB_RS24730 overlap by 165 nucleotidesAMB_RS24730 and AMB_RS22810 overlap by 2 nucleotidesAMB_RS22810 and AMB_RS22815 are separated by 84 nucleotides AMB_RS22805: AMB_RS22805 - ATP-binding protein, at 4,921,578 to 4,922,399 _RS22805 AMB_RS24730: AMB_RS24730 - hypothetical protein, at 4,922,235 to 4,923,689 _RS24730 AMB_RS22810: AMB_RS22810 - hypothetical protein, at 4,923,688 to 4,923,888 _RS22810 AMB_RS22815: AMB_RS22815 - hypothetical protein, at 4,923,973 to 4,924,860 _RS22815 Position (kb) 4922 4923 4924Strain fitness (log2 ratio) -3 -2 -1 0 1at 4921.532 kb on + strandat 4921.532 kb on + strandat 4921.532 kb on + strandat 4921.533 kb on - strandat 4921.533 kb on - strandat 4921.884 kb on + strand, within AMB_RS22805at 4921.884 kb on + strand, within AMB_RS22805at 4921.884 kb on + strand, within AMB_RS22805at 4921.884 kb on + strand, within AMB_RS22805at 4921.884 kb on + strand, within AMB_RS22805at 4921.884 kb on + strand, within AMB_RS22805at 4921.885 kb on - strand, within AMB_RS22805at 4922.397 kb on + strandat 4922.616 kb on + strand, within AMB_RS24730at 4922.730 kb on - strand, within AMB_RS24730at 4922.870 kb on - strand, within AMB_RS24730at 4922.914 kb on + strand, within AMB_RS24730at 4922.914 kb on + strand, within AMB_RS24730at 4922.915 kb on - strand, within AMB_RS24730at 4922.915 kb on - strand, within AMB_RS24730at 4922.915 kb on - strand, within AMB_RS24730at 4922.917 kb on + strand, within AMB_RS24730at 4922.917 kb on + strand, within AMB_RS24730at 4922.917 kb on + strand, within AMB_RS24730at 4922.917 kb on + strand, within AMB_RS24730at 4922.918 kb on - strand, within AMB_RS24730at 4922.918 kb on - strand, within AMB_RS24730at 4922.947 kb on + strand, within AMB_RS24730at 4922.948 kb on - strand, within AMB_RS24730at 4923.222 kb on + strand, within AMB_RS24730at 4923.222 kb on + strand, within AMB_RS24730at 4923.222 kb on + strand, within AMB_RS24730at 4923.283 kb on - strand, within AMB_RS24730at 4923.724 kb on + strand, within AMB_RS22810at 4923.955 kb on + strandat 4923.955 kb on + strandat 4923.955 kb on + strandat 4923.955 kb on + strandat 4924.088 kb on + strand, within AMB_RS22815at 4924.089 kb on - strand, within AMB_RS22815at 4924.108 kb on - strand, within AMB_RS22815at 4924.143 kb on + strand, within AMB_RS22815at 4924.143 kb on + strand, within AMB_RS22815at 4924.143 kb on + strand, within AMB_RS22815at 4924.143 kb on + strand, within AMB_RS22815at 4924.144 kb on - strand, within AMB_RS22815at 4924.144 kb on - strand, within AMB_RS22815at 4924.144 kb on - strand, within AMB_RS22815at 4924.144 kb on - strand, within AMB_RS22815at 4924.144 kb on - strand, within AMB_RS22815at 4924.144 kb on - strand, within AMB_RS22815at 4924.146 kb on + strand, within AMB_RS22815at 4924.248 kb on + strand, within AMB_RS22815at 4924.346 kb on + strand, within AMB_RS22815at 4924.346 kb on + strand, within AMB_RS22815at 4924.346 kb on + strand, within AMB_RS22815at 4924.416 kb on + strand, within AMB_RS22815at 4924.416 kb on + strand, within AMB_RS22815at 4924.417 kb on - strand, within AMB_RS22815at 4924.417 kb on - strand, within AMB_RS22815at 4924.467 kb on - strand, within AMB_RS22815

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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4,921,532 + +1.1
4,921,532 + +0.2
4,921,532 + +0.5
4,921,533 - -0.9
4,921,533 - -2.5
4,921,884 + AMB_RS22805 0.37 -0.3
4,921,884 + AMB_RS22805 0.37 -0.4
4,921,884 + AMB_RS22805 0.37 -0.7
4,921,884 + AMB_RS22805 0.37 -0.0
4,921,884 + AMB_RS22805 0.37 -0.1
4,921,884 + AMB_RS22805 0.37 +0.1
4,921,885 - AMB_RS22805 0.37 +0.0
4,922,397 + +0.3
4,922,616 + AMB_RS24730 0.26 +0.1
4,922,730 - AMB_RS24730 0.34 +0.1
4,922,870 - AMB_RS24730 0.44 -0.8
4,922,914 + AMB_RS24730 0.47 -0.5
4,922,914 + AMB_RS24730 0.47 +0.4
4,922,915 - AMB_RS24730 0.47 -0.4
4,922,915 - AMB_RS24730 0.47 +0.0
4,922,915 - AMB_RS24730 0.47 -0.4
4,922,917 + AMB_RS24730 0.47 +0.8
4,922,917 + AMB_RS24730 0.47 +0.2
4,922,917 + AMB_RS24730 0.47 -1.4
4,922,917 + AMB_RS24730 0.47 +0.2
4,922,918 - AMB_RS24730 0.47 +0.5
4,922,918 - AMB_RS24730 0.47 +0.0
4,922,947 + AMB_RS24730 0.49 +0.3
4,922,948 - AMB_RS24730 0.49 -0.1
4,923,222 + AMB_RS24730 0.68 -0.5
4,923,222 + AMB_RS24730 0.68 -0.7
4,923,222 + AMB_RS24730 0.68 -0.6
4,923,283 - AMB_RS24730 0.72 +0.5
4,923,724 + AMB_RS22810 0.18 +0.1
4,923,955 + -0.8
4,923,955 + +1.1
4,923,955 + +0.5
4,923,955 + -0.3
4,924,088 + AMB_RS22815 0.13 +0.1
4,924,089 - AMB_RS22815 0.13 +0.5
4,924,108 - AMB_RS22815 0.15 -0.6
4,924,143 + AMB_RS22815 0.19 +0.6
4,924,143 + AMB_RS22815 0.19 -0.8
4,924,143 + AMB_RS22815 0.19 +1.7
4,924,143 + AMB_RS22815 0.19 -0.2
4,924,144 - AMB_RS22815 0.19 +0.1
4,924,144 - AMB_RS22815 0.19 +0.7
4,924,144 - AMB_RS22815 0.19 +1.3
4,924,144 - AMB_RS22815 0.19 -0.3
4,924,144 - AMB_RS22815 0.19 -1.2
4,924,144 - AMB_RS22815 0.19 -3.1
4,924,146 + AMB_RS22815 0.19 +0.4
4,924,248 + AMB_RS22815 0.31 -0.7
4,924,346 + AMB_RS22815 0.42 +0.5
4,924,346 + AMB_RS22815 0.42 +0.0
4,924,346 + AMB_RS22815 0.42 +0.6
4,924,416 + AMB_RS22815 0.50 -0.4
4,924,416 + AMB_RS22815 0.50 +0.1
4,924,417 - AMB_RS22815 0.50 -1.1
4,924,417 - AMB_RS22815 0.50 -0.5
4,924,467 - AMB_RS22815 0.56 -0.3

Or see this region's nucleotide sequence