Experiment: 30_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21575 and AMB_RS21580 are separated by 13 nucleotides AMB_RS21580 and AMB_RS21585 are separated by 347 nucleotides AMB_RS21585 and AMB_RS21590 overlap by 4 nucleotides
AMB_RS21575: AMB_RS21575 - hypothetical protein, at 4,676,301 to 4,677,119
_RS21575
AMB_RS21580: AMB_RS21580 - hypothetical protein, at 4,677,133 to 4,677,402
_RS21580
AMB_RS21585: AMB_RS21585 - hypothetical protein, at 4,677,750 to 4,678,319
_RS21585
AMB_RS21590: AMB_RS21590 - hypothetical protein, at 4,678,316 to 4,680,220
_RS21590
Position (kb) 4677
4678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4676.326 kb on - strand at 4676.337 kb on + strand at 4676.338 kb on - strand at 4676.361 kb on + strand at 4676.362 kb on - strand at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.536 kb on - strand, within AMB_RS21575 at 4676.538 kb on + strand, within AMB_RS21575 at 4676.538 kb on + strand, within AMB_RS21575 at 4676.539 kb on - strand, within AMB_RS21575 at 4676.539 kb on - strand, within AMB_RS21575 at 4676.539 kb on - strand, within AMB_RS21575 at 4676.619 kb on + strand, within AMB_RS21575 at 4676.619 kb on + strand, within AMB_RS21575 at 4676.620 kb on - strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.841 kb on + strand, within AMB_RS21575 at 4676.841 kb on + strand, within AMB_RS21575 at 4676.842 kb on - strand, within AMB_RS21575 at 4676.947 kb on - strand, within AMB_RS21575 at 4676.947 kb on - strand, within AMB_RS21575 at 4676.952 kb on + strand, within AMB_RS21575 at 4676.952 kb on + strand, within AMB_RS21575 at 4676.959 kb on - strand, within AMB_RS21575 at 4677.015 kb on + strand, within AMB_RS21575 at 4677.015 kb on + strand, within AMB_RS21575 at 4677.015 kb on + strand, within AMB_RS21575 at 4677.016 kb on - strand, within AMB_RS21575 at 4677.016 kb on - strand, within AMB_RS21575 at 4677.053 kb on + strand at 4677.053 kb on + strand at 4677.117 kb on + strand at 4677.117 kb on + strand at 4677.117 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.139 kb on + strand at 4677.139 kb on + strand at 4677.139 kb on + strand at 4677.140 kb on - strand at 4677.140 kb on - strand at 4677.169 kb on + strand, within AMB_RS21580 at 4677.169 kb on + strand, within AMB_RS21580 at 4677.170 kb on - strand, within AMB_RS21580 at 4677.196 kb on + strand, within AMB_RS21580 at 4677.196 kb on + strand, within AMB_RS21580 at 4677.196 kb on + strand, within AMB_RS21580 at 4677.197 kb on - strand, within AMB_RS21580 at 4677.197 kb on - strand, within AMB_RS21580 at 4677.197 kb on - strand, within AMB_RS21580 at 4677.238 kb on + strand, within AMB_RS21580 at 4677.238 kb on + strand, within AMB_RS21580 at 4677.342 kb on + strand, within AMB_RS21580 at 4677.400 kb on + strand at 4677.400 kb on + strand at 4677.400 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.738 kb on - strand at 4677.966 kb on + strand, within AMB_RS21585 at 4677.966 kb on + strand, within AMB_RS21585 at 4677.966 kb on + strand, within AMB_RS21585 at 4677.966 kb on + strand, within AMB_RS21585 at 4677.967 kb on - strand, within AMB_RS21585 at 4677.967 kb on - strand, within AMB_RS21585 at 4677.967 kb on - strand, within AMB_RS21585 at 4678.046 kb on + strand, within AMB_RS21585 at 4678.047 kb on - strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.096 kb on - strand, within AMB_RS21585 at 4678.096 kb on - strand, within AMB_RS21585 at 4678.096 kb on - strand, within AMB_RS21585 at 4678.175 kb on + strand, within AMB_RS21585 at 4678.326 kb on + strand at 4678.326 kb on + strand at 4678.326 kb on + strand at 4678.327 kb on - strand at 4678.327 kb on - strand at 4678.336 kb on + strand at 4678.337 kb on - strand at 4678.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_2 remove 4,676,326 - +0.1 4,676,337 + -0.2 4,676,338 - +1.1 4,676,361 + -0.1 4,676,362 - -0.1 4,676,535 + AMB_RS21575 0.29 +0.3 4,676,535 + AMB_RS21575 0.29 -0.3 4,676,535 + AMB_RS21575 0.29 -1.7 4,676,535 + AMB_RS21575 0.29 +0.1 4,676,535 + AMB_RS21575 0.29 -0.6 4,676,536 - AMB_RS21575 0.29 -0.8 4,676,538 + AMB_RS21575 0.29 +0.3 4,676,538 + AMB_RS21575 0.29 +0.3 4,676,539 - AMB_RS21575 0.29 +0.1 4,676,539 - AMB_RS21575 0.29 -2.7 4,676,539 - AMB_RS21575 0.29 -0.3 4,676,619 + AMB_RS21575 0.39 -0.3 4,676,619 + AMB_RS21575 0.39 +0.3 4,676,620 - AMB_RS21575 0.39 -1.2 4,676,679 + AMB_RS21575 0.46 -0.0 4,676,679 + AMB_RS21575 0.46 -0.9 4,676,679 + AMB_RS21575 0.46 +1.4 4,676,679 + AMB_RS21575 0.46 -0.0 4,676,679 + AMB_RS21575 0.46 +1.6 4,676,679 + AMB_RS21575 0.46 +1.5 4,676,679 + AMB_RS21575 0.46 -1.0 4,676,680 - AMB_RS21575 0.46 +0.7 4,676,680 - AMB_RS21575 0.46 -2.2 4,676,680 - AMB_RS21575 0.46 +1.1 4,676,680 - AMB_RS21575 0.46 -0.4 4,676,680 - AMB_RS21575 0.46 -0.8 4,676,680 - AMB_RS21575 0.46 +1.2 4,676,680 - AMB_RS21575 0.46 +1.4 4,676,680 - AMB_RS21575 0.46 -0.9 4,676,680 - AMB_RS21575 0.46 +0.1 4,676,680 - AMB_RS21575 0.46 -0.1 4,676,680 - AMB_RS21575 0.46 +0.1 4,676,841 + AMB_RS21575 0.66 -0.5 4,676,841 + AMB_RS21575 0.66 +0.0 4,676,842 - AMB_RS21575 0.66 -1.6 4,676,947 - AMB_RS21575 0.79 +0.1 4,676,947 - AMB_RS21575 0.79 -0.0 4,676,952 + AMB_RS21575 0.79 -0.8 4,676,952 + AMB_RS21575 0.79 -0.1 4,676,959 - AMB_RS21575 0.80 -0.6 4,677,015 + AMB_RS21575 0.87 -1.9 4,677,015 + AMB_RS21575 0.87 -0.6 4,677,015 + AMB_RS21575 0.87 +0.3 4,677,016 - AMB_RS21575 0.87 +0.1 4,677,016 - AMB_RS21575 0.87 -1.4 4,677,053 + +0.6 4,677,053 + -0.6 4,677,117 + -0.4 4,677,117 + +0.1 4,677,117 + -1.3 4,677,127 + -0.2 4,677,127 + -0.4 4,677,127 + -2.2 4,677,127 + -0.6 4,677,127 + -0.8 4,677,127 + +0.2 4,677,127 + -0.4 4,677,127 + +0.3 4,677,128 - -0.0 4,677,128 - +0.0 4,677,128 - -0.9 4,677,128 - -0.6 4,677,128 - +0.5 4,677,128 - -0.3 4,677,128 - -2.9 4,677,128 - -0.4 4,677,128 - -0.5 4,677,139 + +0.0 4,677,139 + +0.1 4,677,139 + -1.0 4,677,140 - -0.2 4,677,140 - -0.8 4,677,169 + AMB_RS21580 0.13 +0.1 4,677,169 + AMB_RS21580 0.13 -0.4 4,677,170 - AMB_RS21580 0.14 +0.2 4,677,196 + AMB_RS21580 0.23 +0.1 4,677,196 + AMB_RS21580 0.23 -2.3 4,677,196 + AMB_RS21580 0.23 +0.3 4,677,197 - AMB_RS21580 0.24 +0.6 4,677,197 - AMB_RS21580 0.24 -2.0 4,677,197 - AMB_RS21580 0.24 -0.0 4,677,238 + AMB_RS21580 0.39 -0.1 4,677,238 + AMB_RS21580 0.39 +0.1 4,677,342 + AMB_RS21580 0.77 +0.6 4,677,400 + -1.1 4,677,400 + +0.4 4,677,400 + +0.1 4,677,737 + +1.0 4,677,737 + +0.2 4,677,737 + -0.5 4,677,737 + -0.1 4,677,737 + -0.6 4,677,737 + -0.3 4,677,737 + -0.0 4,677,737 + -0.2 4,677,737 + -0.2 4,677,737 + -0.1 4,677,737 + -0.1 4,677,738 - -0.5 4,677,966 + AMB_RS21585 0.38 +0.1 4,677,966 + AMB_RS21585 0.38 +0.5 4,677,966 + AMB_RS21585 0.38 -0.3 4,677,966 + AMB_RS21585 0.38 +0.4 4,677,967 - AMB_RS21585 0.38 -0.3 4,677,967 - AMB_RS21585 0.38 +1.9 4,677,967 - AMB_RS21585 0.38 -1.2 4,678,046 + AMB_RS21585 0.52 -1.2 4,678,047 - AMB_RS21585 0.52 -2.7 4,678,095 + AMB_RS21585 0.61 -0.2 4,678,095 + AMB_RS21585 0.61 -0.3 4,678,095 + AMB_RS21585 0.61 -3.6 4,678,095 + AMB_RS21585 0.61 +3.9 4,678,095 + AMB_RS21585 0.61 -1.9 4,678,095 + AMB_RS21585 0.61 -1.4 4,678,096 - AMB_RS21585 0.61 +0.5 4,678,096 - AMB_RS21585 0.61 +0.3 4,678,096 - AMB_RS21585 0.61 +0.0 4,678,175 + AMB_RS21585 0.75 -0.3 4,678,326 + +0.1 4,678,326 + -0.1 4,678,326 + +0.3 4,678,327 - -0.6 4,678,327 - -0.0 4,678,336 + -0.1 4,678,337 - -0.1 4,678,337 - +0.5
Or see this region's nucleotide sequence