Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20700

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20695 and AMB_RS20700 overlap by 14 nucleotidesAMB_RS20700 and AMB_RS20705 overlap by 4 nucleotidesAMB_RS20705 and AMB_RS20710 overlap by 4 nucleotides AMB_RS20695: AMB_RS20695 - 3-deoxy-D-manno-octulosonic acid transferase, at 4,494,463 to 4,495,737 _RS20695 AMB_RS20700: AMB_RS20700 - tetraacyldisaccharide 4'-kinase, at 4,495,724 to 4,496,701 _RS20700 AMB_RS20705: AMB_RS20705 - lauroyl acyltransferase, at 4,496,698 to 4,497,567 _RS20705 AMB_RS20710: AMB_RS20710 - hypothetical protein, at 4,497,564 to 4,498,484 _RS20710 Position (kb) 4495 4496 4497Strain fitness (log2 ratio) -1 0 1at 4496.664 kb on + strandat 4497.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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4,496,664 + -0.9
4,497,585 + +0.7

Or see this region's nucleotide sequence