Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20595

Experiment: 30_mag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20590 and AMB_RS20595 are separated by 15 nucleotidesAMB_RS20595 and AMB_RS20600 are separated by 157 nucleotides AMB_RS20590: AMB_RS20590 - transcription termination/antitermination protein NusA, at 4,474,471 to 4,475,982 _RS20590 AMB_RS20595: AMB_RS20595 - ribosome maturation factor, at 4,475,998 to 4,476,498 _RS20595 AMB_RS20600: AMB_RS20600 - 6-phosphofructokinase, at 4,476,656 to 4,477,870 _RS20600 Position (kb) 4475 4476 4477Strain fitness (log2 ratio) -2 -1 0 1at 4476.280 kb on - strand, within AMB_RS20595at 4476.280 kb on - strand, within AMB_RS20595at 4476.282 kb on - strand, within AMB_RS20595at 4476.282 kb on - strand, within AMB_RS20595at 4476.441 kb on - strand, within AMB_RS20595at 4476.499 kb on - strandat 4476.499 kb on - strandat 4476.520 kb on - strandat 4476.738 kb on + strandat 4476.738 kb on + strandat 4476.738 kb on + strandat 4476.739 kb on - strandat 4476.739 kb on - strandat 4476.739 kb on - strandat 4476.739 kb on - strandat 4476.840 kb on + strand, within AMB_RS20600at 4476.840 kb on + strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.841 kb on - strand, within AMB_RS20600at 4476.988 kb on - strand, within AMB_RS20600at 4476.988 kb on - strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.254 kb on + strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.255 kb on - strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.258 kb on + strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.259 kb on - strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.347 kb on + strand, within AMB_RS20600at 4477.348 kb on - strand, within AMB_RS20600at 4477.348 kb on - strand, within AMB_RS20600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
remove
4,476,280 - AMB_RS20595 0.56 -1.5
4,476,280 - AMB_RS20595 0.56 -0.8
4,476,282 - AMB_RS20595 0.57 +0.4
4,476,282 - AMB_RS20595 0.57 +0.2
4,476,441 - AMB_RS20595 0.88 -0.4
4,476,499 - -0.0
4,476,499 - -0.6
4,476,520 - +0.3
4,476,738 + +0.8
4,476,738 + +0.4
4,476,738 + +0.8
4,476,739 - -0.2
4,476,739 - -0.3
4,476,739 - +0.1
4,476,739 - -0.0
4,476,840 + AMB_RS20600 0.15 -0.2
4,476,840 + AMB_RS20600 0.15 +0.3
4,476,841 - AMB_RS20600 0.15 +0.4
4,476,841 - AMB_RS20600 0.15 -0.7
4,476,841 - AMB_RS20600 0.15 +0.4
4,476,841 - AMB_RS20600 0.15 +0.1
4,476,841 - AMB_RS20600 0.15 -0.4
4,476,988 - AMB_RS20600 0.27 +0.5
4,476,988 - AMB_RS20600 0.27 -0.4
4,477,254 + AMB_RS20600 0.49 -0.4
4,477,254 + AMB_RS20600 0.49 +0.3
4,477,254 + AMB_RS20600 0.49 -0.8
4,477,254 + AMB_RS20600 0.49 -0.7
4,477,254 + AMB_RS20600 0.49 -0.1
4,477,254 + AMB_RS20600 0.49 -0.9
4,477,254 + AMB_RS20600 0.49 -0.3
4,477,254 + AMB_RS20600 0.49 -0.0
4,477,254 + AMB_RS20600 0.49 +1.4
4,477,254 + AMB_RS20600 0.49 -0.1
4,477,254 + AMB_RS20600 0.49 -0.2
4,477,255 - AMB_RS20600 0.49 -0.8
4,477,255 - AMB_RS20600 0.49 -0.3
4,477,255 - AMB_RS20600 0.49 -0.7
4,477,255 - AMB_RS20600 0.49 -1.9
4,477,255 - AMB_RS20600 0.49 +0.5
4,477,255 - AMB_RS20600 0.49 -0.6
4,477,255 - AMB_RS20600 0.49 +0.7
4,477,258 + AMB_RS20600 0.50 +0.0
4,477,258 + AMB_RS20600 0.50 +0.1
4,477,258 + AMB_RS20600 0.50 -0.6
4,477,258 + AMB_RS20600 0.50 -1.1
4,477,258 + AMB_RS20600 0.50 -0.1
4,477,258 + AMB_RS20600 0.50 +1.5
4,477,259 - AMB_RS20600 0.50 -0.2
4,477,259 - AMB_RS20600 0.50 -1.2
4,477,259 - AMB_RS20600 0.50 -0.6
4,477,259 - AMB_RS20600 0.50 -0.4
4,477,347 + AMB_RS20600 0.57 -0.3
4,477,347 + AMB_RS20600 0.57 -1.5
4,477,347 + AMB_RS20600 0.57 -0.6
4,477,348 - AMB_RS20600 0.57 -1.0
4,477,348 - AMB_RS20600 0.57 +0.4

Or see this region's nucleotide sequence