Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19870

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19865 and AMB_RS19870 overlap by 4 nucleotidesAMB_RS19870 and AMB_RS19875 are separated by 304 nucleotides AMB_RS19865: AMB_RS19865 - 3-dehydroquinate synthase, at 4,337,078 to 4,338,193 _RS19865 AMB_RS19870: AMB_RS19870 - shikimate kinase, at 4,338,190 to 4,338,765 _RS19870 AMB_RS19875: AMB_RS19875 - hypothetical protein, at 4,339,070 to 4,340,848 _RS19875 Position (kb) 4338 4339Strain fitness (log2 ratio) -2 -1 0 1at 4338.194 kb on - strandat 4338.216 kb on - strandat 4338.216 kb on - strandat 4338.862 kb on - strandat 4338.862 kb on - strandat 4338.862 kb on - strandat 4338.930 kb on - strandat 4339.211 kb on - strandat 4339.211 kb on - strandat 4339.228 kb on + strandat 4339.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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4,338,194 - -0.1
4,338,216 - -1.3
4,338,216 - -0.7
4,338,862 - +0.1
4,338,862 - -0.3
4,338,862 - -1.7
4,338,930 - -0.9
4,339,211 - -1.1
4,339,211 - -1.4
4,339,228 + +0.1
4,339,229 - -2.1

Or see this region's nucleotide sequence