Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19820

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19815 and AMB_RS19820 are separated by 16 nucleotidesAMB_RS19820 and AMB_RS19825 are separated by 2 nucleotides AMB_RS19815: AMB_RS19815 - cobaltochelatase subunit CobS, at 4,327,689 to 4,328,690 _RS19815 AMB_RS19820: AMB_RS19820 - cobaltochelatase subunit CobT, at 4,328,707 to 4,330,596 _RS19820 AMB_RS19825: AMB_RS19825 - signal transduction histidine kinase, at 4,330,599 to 4,332,242 _RS19825 Position (kb) 4328 4329 4330 4331Strain fitness (log2 ratio) -3 -2 -1 0 1at 4328.688 kb on + strandat 4330.910 kb on - strand, within AMB_RS19825at 4331.062 kb on - strand, within AMB_RS19825at 4331.218 kb on - strand, within AMB_RS19825at 4331.218 kb on - strand, within AMB_RS19825at 4331.232 kb on + strand, within AMB_RS19825at 4331.388 kb on + strand, within AMB_RS19825at 4331.388 kb on + strand, within AMB_RS19825at 4331.388 kb on + strand, within AMB_RS19825at 4331.388 kb on + strand, within AMB_RS19825at 4331.389 kb on - strand, within AMB_RS19825at 4331.389 kb on - strand, within AMB_RS19825at 4331.389 kb on - strand, within AMB_RS19825

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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4,328,688 + +0.3
4,330,910 - AMB_RS19825 0.19 -0.5
4,331,062 - AMB_RS19825 0.28 -0.7
4,331,218 - AMB_RS19825 0.38 +0.4
4,331,218 - AMB_RS19825 0.38 -1.6
4,331,232 + AMB_RS19825 0.39 +0.2
4,331,388 + AMB_RS19825 0.48 -3.3
4,331,388 + AMB_RS19825 0.48 -1.2
4,331,388 + AMB_RS19825 0.48 -1.5
4,331,388 + AMB_RS19825 0.48 +0.1
4,331,389 - AMB_RS19825 0.48 -0.9
4,331,389 - AMB_RS19825 0.48 +1.5
4,331,389 - AMB_RS19825 0.48 -0.2

Or see this region's nucleotide sequence