Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19170

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19160 and AMB_RS19165 are separated by 55 nucleotidesAMB_RS19165 and AMB_RS19170 are separated by 243 nucleotidesAMB_RS19170 and AMB_RS19175 are separated by 28 nucleotides AMB_RS19160: AMB_RS19160 - methyltransferase domain-containing protein, at 4,165,757 to 4,167,079 _RS19160 AMB_RS19165: AMB_RS19165 - hypothetical protein, at 4,167,135 to 4,167,317 _RS19165 AMB_RS19170: AMB_RS19170 - 3-beta hydroxysteroid dehydrogenase, at 4,167,561 to 4,168,631 _RS19170 AMB_RS19175: AMB_RS19175 - NAD-dependent epimerase, at 4,168,660 to 4,169,742 _RS19175 Position (kb) 4167 4168 4169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4166.864 kb on + strand, within AMB_RS19160at 4166.864 kb on + strand, within AMB_RS19160at 4166.864 kb on + strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4166.865 kb on - strand, within AMB_RS19160at 4167.077 kb on + strandat 4167.352 kb on + strandat 4167.353 kb on - strandat 4167.353 kb on - strandat 4167.439 kb on + strandat 4167.439 kb on + strandat 4167.440 kb on - strandat 4167.465 kb on - strandat 4167.473 kb on + strandat 4167.474 kb on - strandat 4167.474 kb on - strandat 4167.484 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.501 kb on + strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.502 kb on - strandat 4167.828 kb on + strand, within AMB_RS19170at 4167.829 kb on - strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.879 kb on - strand, within AMB_RS19170at 4167.891 kb on + strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.942 kb on + strand, within AMB_RS19170at 4168.080 kb on + strand, within AMB_RS19170at 4168.080 kb on + strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.122 kb on + strand, within AMB_RS19170at 4168.122 kb on + strand, within AMB_RS19170at 4168.123 kb on - strand, within AMB_RS19170at 4168.134 kb on + strand, within AMB_RS19170at 4168.134 kb on + strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.257 kb on + strand, within AMB_RS19170at 4168.257 kb on + strand, within AMB_RS19170at 4168.258 kb on - strand, within AMB_RS19170at 4168.317 kb on + strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.497 kb on + strand, within AMB_RS19170at 4168.497 kb on + strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.565 kb on - strandat 4168.565 kb on - strandat 4168.837 kb on + strand, within AMB_RS19175at 4168.837 kb on + strand, within AMB_RS19175at 4168.837 kb on + strand, within AMB_RS19175at 4169.074 kb on + strand, within AMB_RS19175at 4169.075 kb on - strand, within AMB_RS19175at 4169.210 kb on + strand, within AMB_RS19175at 4169.210 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.341 kb on + strand, within AMB_RS19175at 4169.375 kb on - strand, within AMB_RS19175at 4169.375 kb on - strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.377 kb on - strand, within AMB_RS19175at 4169.377 kb on - strand, within AMB_RS19175at 4169.389 kb on + strand, within AMB_RS19175at 4169.390 kb on - strand, within AMB_RS19175at 4169.390 kb on - strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.483 kb on - strand, within AMB_RS19175at 4169.483 kb on - strand, within AMB_RS19175at 4169.575 kb on + strand, within AMB_RS19175at 4169.575 kb on + strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.593 kb on - strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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4,166,864 + AMB_RS19160 0.84 -1.6
4,166,864 + AMB_RS19160 0.84 -0.9
4,166,864 + AMB_RS19160 0.84 -1.8
4,166,865 - AMB_RS19160 0.84 +0.4
4,166,865 - AMB_RS19160 0.84 +0.3
4,166,865 - AMB_RS19160 0.84 -0.5
4,167,077 + -1.6
4,167,352 + -2.4
4,167,353 - -0.3
4,167,353 - +0.1
4,167,439 + -0.8
4,167,439 + -0.2
4,167,440 - +0.2
4,167,465 - -0.4
4,167,473 + +1.8
4,167,474 - -0.2
4,167,474 - -0.7
4,167,484 + -0.3
4,167,501 + -0.9
4,167,501 + -0.5
4,167,501 + -0.7
4,167,501 + -0.2
4,167,501 + -1.0
4,167,501 + -0.5
4,167,502 - -0.6
4,167,502 - -1.2
4,167,502 - -0.6
4,167,502 - +0.1
4,167,502 - -0.4
4,167,828 + AMB_RS19170 0.25 -0.4
4,167,829 - AMB_RS19170 0.25 +1.4
4,167,846 + AMB_RS19170 0.27 -0.9
4,167,846 + AMB_RS19170 0.27 -0.6
4,167,846 + AMB_RS19170 0.27 -0.1
4,167,846 + AMB_RS19170 0.27 +0.1
4,167,846 + AMB_RS19170 0.27 -1.7
4,167,847 - AMB_RS19170 0.27 +0.2
4,167,847 - AMB_RS19170 0.27 -0.0
4,167,847 - AMB_RS19170 0.27 -1.2
4,167,847 - AMB_RS19170 0.27 +0.3
4,167,847 - AMB_RS19170 0.27 -2.0
4,167,847 - AMB_RS19170 0.27 -0.9
4,167,847 - AMB_RS19170 0.27 -0.3
4,167,847 - AMB_RS19170 0.27 -0.7
4,167,879 - AMB_RS19170 0.30 +1.9
4,167,891 + AMB_RS19170 0.31 -0.0
4,167,892 - AMB_RS19170 0.31 -0.2
4,167,892 - AMB_RS19170 0.31 -0.0
4,167,942 + AMB_RS19170 0.36 -4.6
4,168,080 + AMB_RS19170 0.48 -0.6
4,168,080 + AMB_RS19170 0.48 -0.8
4,168,081 - AMB_RS19170 0.49 -1.3
4,168,081 - AMB_RS19170 0.49 -1.8
4,168,081 - AMB_RS19170 0.49 -2.5
4,168,081 - AMB_RS19170 0.49 +0.7
4,168,081 - AMB_RS19170 0.49 +0.0
4,168,081 - AMB_RS19170 0.49 -2.9
4,168,122 + AMB_RS19170 0.52 +0.1
4,168,122 + AMB_RS19170 0.52 -0.5
4,168,123 - AMB_RS19170 0.52 -0.2
4,168,134 + AMB_RS19170 0.54 +0.3
4,168,134 + AMB_RS19170 0.54 -0.4
4,168,135 - AMB_RS19170 0.54 -0.6
4,168,135 - AMB_RS19170 0.54 -0.3
4,168,135 - AMB_RS19170 0.54 -0.6
4,168,257 + AMB_RS19170 0.65 -0.9
4,168,257 + AMB_RS19170 0.65 +0.1
4,168,258 - AMB_RS19170 0.65 -1.1
4,168,317 + AMB_RS19170 0.71 -0.3
4,168,318 - AMB_RS19170 0.71 -0.6
4,168,318 - AMB_RS19170 0.71 -0.1
4,168,318 - AMB_RS19170 0.71 +0.8
4,168,318 - AMB_RS19170 0.71 -1.8
4,168,318 - AMB_RS19170 0.71 -0.8
4,168,497 + AMB_RS19170 0.87 +0.0
4,168,497 + AMB_RS19170 0.87 +0.7
4,168,498 - AMB_RS19170 0.87 +0.9
4,168,498 - AMB_RS19170 0.87 +0.5
4,168,498 - AMB_RS19170 0.87 +0.5
4,168,498 - AMB_RS19170 0.87 -0.2
4,168,498 - AMB_RS19170 0.87 -0.1
4,168,500 + AMB_RS19170 0.88 -0.3
4,168,500 + AMB_RS19170 0.88 +0.3
4,168,500 + AMB_RS19170 0.88 -2.2
4,168,500 + AMB_RS19170 0.88 +0.1
4,168,501 - AMB_RS19170 0.88 -0.2
4,168,501 - AMB_RS19170 0.88 -0.6
4,168,501 - AMB_RS19170 0.88 -0.5
4,168,501 - AMB_RS19170 0.88 -0.2
4,168,501 - AMB_RS19170 0.88 -1.9
4,168,565 - -0.3
4,168,565 - -0.5
4,168,837 + AMB_RS19175 0.16 -1.6
4,168,837 + AMB_RS19175 0.16 -0.4
4,168,837 + AMB_RS19175 0.16 -0.0
4,169,074 + AMB_RS19175 0.38 -0.1
4,169,075 - AMB_RS19175 0.38 +1.2
4,169,210 + AMB_RS19175 0.51 +0.7
4,169,210 + AMB_RS19175 0.51 -0.6
4,169,245 + AMB_RS19175 0.54 +0.2
4,169,245 + AMB_RS19175 0.54 -0.3
4,169,245 + AMB_RS19175 0.54 +2.7
4,169,341 + AMB_RS19175 0.63 +0.4
4,169,375 - AMB_RS19175 0.66 -0.7
4,169,375 - AMB_RS19175 0.66 -0.2
4,169,376 + AMB_RS19175 0.66 +0.6
4,169,376 + AMB_RS19175 0.66 -0.3
4,169,376 + AMB_RS19175 0.66 -0.8
4,169,376 + AMB_RS19175 0.66 -0.1
4,169,376 + AMB_RS19175 0.66 +0.6
4,169,376 + AMB_RS19175 0.66 -0.2
4,169,377 - AMB_RS19175 0.66 -0.2
4,169,377 - AMB_RS19175 0.66 -0.6
4,169,389 + AMB_RS19175 0.67 -0.2
4,169,390 - AMB_RS19175 0.67 -0.7
4,169,390 - AMB_RS19175 0.67 -0.2
4,169,482 + AMB_RS19175 0.76 +1.0
4,169,482 + AMB_RS19175 0.76 -0.2
4,169,482 + AMB_RS19175 0.76 -1.1
4,169,482 + AMB_RS19175 0.76 -0.1
4,169,483 - AMB_RS19175 0.76 -1.9
4,169,483 - AMB_RS19175 0.76 +0.3
4,169,575 + AMB_RS19175 0.84 -0.6
4,169,575 + AMB_RS19175 0.84 +0.1
4,169,576 - AMB_RS19175 0.85 +0.1
4,169,576 - AMB_RS19175 0.85 -0.1
4,169,576 - AMB_RS19175 0.85 +0.5
4,169,576 - AMB_RS19175 0.85 -0.1
4,169,593 - AMB_RS19175 0.86 -0.5
4,169,604 + AMB_RS19175 0.87 -0.9
4,169,604 + AMB_RS19175 0.87 -0.3
4,169,604 + AMB_RS19175 0.87 -0.5
4,169,604 + AMB_RS19175 0.87 -0.2
4,169,605 - AMB_RS19175 0.87 -0.5
4,169,605 - AMB_RS19175 0.87 -0.4
4,169,605 - AMB_RS19175 0.87 -1.5
4,169,605 - AMB_RS19175 0.87 +1.1
4,169,605 - AMB_RS19175 0.87 -0.6
4,169,605 - AMB_RS19175 0.87 +1.3
4,169,605 - AMB_RS19175 0.87 -1.1

Or see this region's nucleotide sequence