Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14335

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14330 and AMB_RS14335 are separated by 2 nucleotidesAMB_RS14335 and AMB_RS14340 overlap by 8 nucleotides AMB_RS14330: AMB_RS14330 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,047,356 to 3,048,450 _RS14330 AMB_RS14335: AMB_RS14335 - phosphoribosylglycinamide formyltransferase, at 3,048,453 to 3,049,064 _RS14335 AMB_RS14340: AMB_RS14340 - lipopolysaccharide heptosyltransferase family protein, at 3,049,057 to 3,050,037 _RS14340 Position (kb) 3048 3049 3050Strain fitness (log2 ratio) -1 0 1at 3050.058 kb on - strandat 3050.058 kb on - strandat 3050.062 kb on + strandat 3050.062 kb on + strandat 3050.062 kb on + strandat 3050.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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3,050,058 - -0.5
3,050,058 - -0.4
3,050,062 + +0.9
3,050,062 + +0.1
3,050,062 + -0.3
3,050,063 - +0.3

Or see this region's nucleotide sequence