Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06165

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06160 and AMB_RS06165 are separated by 10 nucleotidesAMB_RS06165 and AMB_RS06170 are separated by 74 nucleotidesAMB_RS06170 and AMB_RS06175 are separated by 1 nucleotides AMB_RS06160: AMB_RS06160 - MFS transporter, at 1,285,809 to 1,287,011 _RS06160 AMB_RS06165: AMB_RS06165 - CBS domain-containing protein, at 1,287,022 to 1,289,664 _RS06165 AMB_RS06170: AMB_RS06170 - hypothetical protein, at 1,289,739 to 1,290,530 _RS06170 AMB_RS06175: AMB_RS06175 - prolyl oligopeptidase, at 1,290,532 to 1,291,428 _RS06175 Position (kb) 1287 1288 1289 1290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1286.055 kb on + strand, within AMB_RS06160at 1286.056 kb on - strand, within AMB_RS06160at 1286.056 kb on - strand, within AMB_RS06160at 1286.056 kb on - strand, within AMB_RS06160at 1286.068 kb on + strand, within AMB_RS06160at 1286.069 kb on - strand, within AMB_RS06160at 1286.069 kb on - strand, within AMB_RS06160at 1286.157 kb on + strand, within AMB_RS06160at 1286.157 kb on + strand, within AMB_RS06160at 1286.157 kb on + strand, within AMB_RS06160at 1286.157 kb on + strand, within AMB_RS06160at 1286.157 kb on + strand, within AMB_RS06160at 1286.157 kb on + strand, within AMB_RS06160at 1286.158 kb on - strand, within AMB_RS06160at 1286.158 kb on - strand, within AMB_RS06160at 1286.158 kb on - strand, within AMB_RS06160at 1286.484 kb on + strand, within AMB_RS06160at 1286.484 kb on + strand, within AMB_RS06160at 1286.577 kb on + strand, within AMB_RS06160at 1286.578 kb on - strand, within AMB_RS06160at 1286.646 kb on + strand, within AMB_RS06160at 1286.647 kb on - strand, within AMB_RS06160at 1286.647 kb on - strand, within AMB_RS06160at 1286.647 kb on - strand, within AMB_RS06160at 1286.787 kb on + strand, within AMB_RS06160at 1286.787 kb on + strand, within AMB_RS06160at 1286.787 kb on + strand, within AMB_RS06160at 1286.789 kb on + strand, within AMB_RS06160at 1286.790 kb on - strand, within AMB_RS06160at 1286.790 kb on - strand, within AMB_RS06160at 1287.105 kb on - strandat 1287.459 kb on - strand, within AMB_RS06165at 1287.764 kb on + strand, within AMB_RS06165at 1287.764 kb on + strand, within AMB_RS06165at 1287.765 kb on - strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.857 kb on + strand, within AMB_RS06165at 1287.866 kb on + strand, within AMB_RS06165at 1287.866 kb on + strand, within AMB_RS06165at 1287.866 kb on + strand, within AMB_RS06165at 1287.866 kb on + strand, within AMB_RS06165at 1287.866 kb on + strand, within AMB_RS06165at 1287.867 kb on - strand, within AMB_RS06165at 1287.867 kb on - strand, within AMB_RS06165at 1287.896 kb on + strand, within AMB_RS06165at 1287.896 kb on + strand, within AMB_RS06165at 1287.896 kb on + strand, within AMB_RS06165at 1287.897 kb on - strand, within AMB_RS06165at 1287.953 kb on + strand, within AMB_RS06165at 1287.983 kb on + strand, within AMB_RS06165at 1287.983 kb on + strand, within AMB_RS06165at 1287.984 kb on - strand, within AMB_RS06165at 1287.984 kb on - strand, within AMB_RS06165at 1287.984 kb on - strand, within AMB_RS06165at 1287.984 kb on - strand, within AMB_RS06165at 1287.984 kb on - strand, within AMB_RS06165at 1288.337 kb on + strand, within AMB_RS06165at 1288.413 kb on + strand, within AMB_RS06165at 1288.460 kb on + strand, within AMB_RS06165at 1288.461 kb on - strand, within AMB_RS06165at 1288.505 kb on + strand, within AMB_RS06165at 1288.505 kb on + strand, within AMB_RS06165at 1288.529 kb on + strand, within AMB_RS06165at 1288.529 kb on + strand, within AMB_RS06165at 1288.529 kb on + strand, within AMB_RS06165at 1288.529 kb on + strand, within AMB_RS06165at 1288.530 kb on - strand, within AMB_RS06165at 1288.530 kb on - strand, within AMB_RS06165at 1288.530 kb on - strand, within AMB_RS06165at 1288.541 kb on + strand, within AMB_RS06165at 1288.784 kb on + strand, within AMB_RS06165at 1288.784 kb on + strand, within AMB_RS06165at 1288.784 kb on + strand, within AMB_RS06165at 1288.790 kb on + strand, within AMB_RS06165at 1288.790 kb on + strand, within AMB_RS06165at 1288.790 kb on + strand, within AMB_RS06165at 1288.790 kb on + strand, within AMB_RS06165at 1288.791 kb on - strand, within AMB_RS06165at 1288.997 kb on - strand, within AMB_RS06165at 1289.525 kb on - strandat 1289.566 kb on - strandat 1289.681 kb on + strandat 1289.715 kb on + strandat 1289.715 kb on + strandat 1289.715 kb on + strandat 1289.716 kb on - strandat 1289.718 kb on + strandat 1289.718 kb on + strandat 1289.719 kb on - strandat 1289.719 kb on - strandat 1289.882 kb on + strand, within AMB_RS06170at 1289.882 kb on + strand, within AMB_RS06170at 1289.882 kb on + strand, within AMB_RS06170at 1289.882 kb on + strand, within AMB_RS06170at 1289.883 kb on - strand, within AMB_RS06170at 1289.883 kb on - strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.884 kb on + strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.885 kb on - strand, within AMB_RS06170at 1289.946 kb on + strand, within AMB_RS06170at 1289.947 kb on - strand, within AMB_RS06170at 1289.947 kb on - strand, within AMB_RS06170at 1289.947 kb on - strand, within AMB_RS06170at 1289.992 kb on - strand, within AMB_RS06170at 1290.048 kb on + strand, within AMB_RS06170at 1290.112 kb on + strand, within AMB_RS06170at 1290.112 kb on + strand, within AMB_RS06170at 1290.528 kb on + strandat 1290.528 kb on + strandat 1290.528 kb on + strandat 1290.528 kb on + strandat 1290.529 kb on - strandat 1290.529 kb on - strandat 1290.529 kb on - strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.605 kb on + strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.606 kb on - strandat 1290.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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1,286,055 + AMB_RS06160 0.20 +0.7
1,286,056 - AMB_RS06160 0.21 -1.3
1,286,056 - AMB_RS06160 0.21 +0.4
1,286,056 - AMB_RS06160 0.21 +0.1
1,286,068 + AMB_RS06160 0.22 -0.2
1,286,069 - AMB_RS06160 0.22 -0.9
1,286,069 - AMB_RS06160 0.22 +0.1
1,286,157 + AMB_RS06160 0.29 +0.3
1,286,157 + AMB_RS06160 0.29 -1.5
1,286,157 + AMB_RS06160 0.29 +1.0
1,286,157 + AMB_RS06160 0.29 -0.2
1,286,157 + AMB_RS06160 0.29 +0.9
1,286,157 + AMB_RS06160 0.29 -0.1
1,286,158 - AMB_RS06160 0.29 +0.4
1,286,158 - AMB_RS06160 0.29 -0.8
1,286,158 - AMB_RS06160 0.29 -0.4
1,286,484 + AMB_RS06160 0.56 +0.8
1,286,484 + AMB_RS06160 0.56 -1.3
1,286,577 + AMB_RS06160 0.64 -0.5
1,286,578 - AMB_RS06160 0.64 -0.2
1,286,646 + AMB_RS06160 0.70 -0.7
1,286,647 - AMB_RS06160 0.70 -0.7
1,286,647 - AMB_RS06160 0.70 +3.3
1,286,647 - AMB_RS06160 0.70 -3.3
1,286,787 + AMB_RS06160 0.81 +1.4
1,286,787 + AMB_RS06160 0.81 +0.2
1,286,787 + AMB_RS06160 0.81 -0.5
1,286,789 + AMB_RS06160 0.81 -0.2
1,286,790 - AMB_RS06160 0.82 +1.1
1,286,790 - AMB_RS06160 0.82 +0.5
1,287,105 - -0.1
1,287,459 - AMB_RS06165 0.17 +0.5
1,287,764 + AMB_RS06165 0.28 +0.1
1,287,764 + AMB_RS06165 0.28 +0.4
1,287,765 - AMB_RS06165 0.28 +0.3
1,287,857 + AMB_RS06165 0.32 +0.6
1,287,857 + AMB_RS06165 0.32 +0.1
1,287,857 + AMB_RS06165 0.32 -0.0
1,287,857 + AMB_RS06165 0.32 +0.3
1,287,857 + AMB_RS06165 0.32 -1.5
1,287,857 + AMB_RS06165 0.32 +1.7
1,287,857 + AMB_RS06165 0.32 +0.3
1,287,866 + AMB_RS06165 0.32 +0.1
1,287,866 + AMB_RS06165 0.32 +0.1
1,287,866 + AMB_RS06165 0.32 +0.3
1,287,866 + AMB_RS06165 0.32 +1.1
1,287,866 + AMB_RS06165 0.32 +0.2
1,287,867 - AMB_RS06165 0.32 +0.6
1,287,867 - AMB_RS06165 0.32 -0.2
1,287,896 + AMB_RS06165 0.33 -0.7
1,287,896 + AMB_RS06165 0.33 +0.3
1,287,896 + AMB_RS06165 0.33 +0.3
1,287,897 - AMB_RS06165 0.33 -0.1
1,287,953 + AMB_RS06165 0.35 -0.9
1,287,983 + AMB_RS06165 0.36 +0.0
1,287,983 + AMB_RS06165 0.36 -0.1
1,287,984 - AMB_RS06165 0.36 -1.2
1,287,984 - AMB_RS06165 0.36 -0.4
1,287,984 - AMB_RS06165 0.36 +0.0
1,287,984 - AMB_RS06165 0.36 -0.3
1,287,984 - AMB_RS06165 0.36 +0.1
1,288,337 + AMB_RS06165 0.50 +0.2
1,288,413 + AMB_RS06165 0.53 +1.4
1,288,460 + AMB_RS06165 0.54 -0.2
1,288,461 - AMB_RS06165 0.54 -0.1
1,288,505 + AMB_RS06165 0.56 -1.5
1,288,505 + AMB_RS06165 0.56 +0.1
1,288,529 + AMB_RS06165 0.57 -1.5
1,288,529 + AMB_RS06165 0.57 +0.0
1,288,529 + AMB_RS06165 0.57 -0.4
1,288,529 + AMB_RS06165 0.57 +1.1
1,288,530 - AMB_RS06165 0.57 -0.2
1,288,530 - AMB_RS06165 0.57 +0.7
1,288,530 - AMB_RS06165 0.57 +0.2
1,288,541 + AMB_RS06165 0.57 +0.7
1,288,784 + AMB_RS06165 0.67 -1.0
1,288,784 + AMB_RS06165 0.67 +0.6
1,288,784 + AMB_RS06165 0.67 +0.7
1,288,790 + AMB_RS06165 0.67 +0.3
1,288,790 + AMB_RS06165 0.67 +0.8
1,288,790 + AMB_RS06165 0.67 +0.2
1,288,790 + AMB_RS06165 0.67 +0.2
1,288,791 - AMB_RS06165 0.67 +0.0
1,288,997 - AMB_RS06165 0.75 +0.1
1,289,525 - +0.9
1,289,566 - +0.7
1,289,681 + +0.6
1,289,715 + -0.9
1,289,715 + -1.3
1,289,715 + +0.2
1,289,716 - -1.2
1,289,718 + +0.1
1,289,718 + +0.1
1,289,719 - -0.3
1,289,719 - +1.1
1,289,882 + AMB_RS06170 0.18 +0.8
1,289,882 + AMB_RS06170 0.18 -0.1
1,289,882 + AMB_RS06170 0.18 -3.2
1,289,882 + AMB_RS06170 0.18 -1.2
1,289,883 - AMB_RS06170 0.18 +0.2
1,289,883 - AMB_RS06170 0.18 -0.9
1,289,884 + AMB_RS06170 0.18 -0.3
1,289,884 + AMB_RS06170 0.18 -0.6
1,289,884 + AMB_RS06170 0.18 +0.8
1,289,884 + AMB_RS06170 0.18 -0.3
1,289,885 - AMB_RS06170 0.18 +0.2
1,289,885 - AMB_RS06170 0.18 +0.2
1,289,885 - AMB_RS06170 0.18 -0.1
1,289,885 - AMB_RS06170 0.18 +1.1
1,289,885 - AMB_RS06170 0.18 +0.1
1,289,885 - AMB_RS06170 0.18 +0.4
1,289,885 - AMB_RS06170 0.18 -1.1
1,289,885 - AMB_RS06170 0.18 -0.3
1,289,885 - AMB_RS06170 0.18 -0.4
1,289,946 + AMB_RS06170 0.26 +1.1
1,289,947 - AMB_RS06170 0.26 -0.2
1,289,947 - AMB_RS06170 0.26 +0.1
1,289,947 - AMB_RS06170 0.26 +0.0
1,289,992 - AMB_RS06170 0.32 +2.2
1,290,048 + AMB_RS06170 0.39 -0.3
1,290,112 + AMB_RS06170 0.47 -1.0
1,290,112 + AMB_RS06170 0.47 -0.6
1,290,528 + -1.4
1,290,528 + -0.2
1,290,528 + +0.2
1,290,528 + -1.4
1,290,529 - -0.0
1,290,529 - -0.2
1,290,529 - -0.2
1,290,605 + -0.1
1,290,605 + -0.8
1,290,605 + -0.4
1,290,605 + -1.7
1,290,605 + +0.6
1,290,605 + +0.7
1,290,605 + -0.1
1,290,605 + +0.4
1,290,606 - -0.1
1,290,606 - -0.1
1,290,606 - -0.2
1,290,606 - +0.6
1,290,606 - -0.2

Or see this region's nucleotide sequence