Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02640

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02635 and AMB_RS02640 are separated by 72 nucleotidesAMB_RS02640 and AMB_RS02645 are separated by 100 nucleotidesAMB_RS02645 and AMB_RS02650 are separated by 37 nucleotides AMB_RS02635: AMB_RS02635 - type I glyceraldehyde-3-phosphate dehydrogenase, at 548,870 to 549,868 _RS02635 AMB_RS02640: AMB_RS02640 - phosphoglycerate kinase, at 549,941 to 551,188 _RS02640 AMB_RS02645: AMB_RS02645 - precorrin-4 C(11)-methyltransferase, at 551,289 to 552,050 _RS02645 AMB_RS02650: AMB_RS02650 - uroporphyrinogen-III C-methyltransferase, at 552,088 to 552,870 _RS02650 Position (kb) 549 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1at 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 549.866 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.072 kb on + strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.073 kb on - strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.074 kb on + strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.075 kb on - strandat 552.077 kb on + strandat 552.078 kb on - strandat 552.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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549,866 + -1.6
549,866 + -0.1
549,866 + -0.8
549,866 + -1.0
549,866 + -3.7
549,866 + -1.7
549,866 + -2.1
549,866 + -1.1
549,866 + -2.8
552,072 + +0.4
552,072 + -1.2
552,072 + +0.6
552,072 + +0.3
552,073 - -0.5
552,073 - -1.0
552,073 - -1.2
552,073 - -1.4
552,073 - -1.4
552,073 - -0.5
552,073 - -2.0
552,073 - +1.1
552,073 - -0.6
552,073 - -0.1
552,073 - -0.4
552,073 - -1.1
552,073 - -1.9
552,074 + +1.0
552,074 + +0.3
552,074 + -0.6
552,074 + -0.2
552,074 + -0.3
552,074 + -0.3
552,075 - -0.4
552,075 - -0.7
552,075 - +0.1
552,075 - +0.3
552,075 - +1.3
552,075 - +0.9
552,075 - -0.8
552,075 - -0.2
552,077 + +0.4
552,078 - -2.2
552,079 - -0.4

Or see this region's nucleotide sequence