Experiment: 30_mag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02585 and AMB_RS02590 are separated by 12 nucleotides AMB_RS02590 and AMB_RS02595 are separated by 260 nucleotides
AMB_RS02585: AMB_RS02585 - flagellar motor switch protein FliG, at 536,104 to 537,123
_RS02585
AMB_RS02590: AMB_RS02590 - flagellar M-ring protein FliF, at 537,136 to 538,797
_RS02590
AMB_RS02595: AMB_RS02595 - flagellar hook protein FlgE, at 539,058 to 541,589
_RS02595
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 536.747 kb on + strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.748 kb on - strand, within AMB_RS02585 at 536.797 kb on - strand, within AMB_RS02585 at 537.101 kb on + strand at 537.102 kb on - strand at 537.563 kb on + strand, within AMB_RS02590 at 537.563 kb on + strand, within AMB_RS02590 at 537.563 kb on + strand, within AMB_RS02590 at 537.563 kb on + strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.564 kb on - strand, within AMB_RS02590 at 537.795 kb on - strand, within AMB_RS02590 at 537.795 kb on - strand, within AMB_RS02590 at 538.130 kb on + strand, within AMB_RS02590 at 538.131 kb on - strand, within AMB_RS02590 at 538.131 kb on - strand, within AMB_RS02590 at 538.595 kb on + strand, within AMB_RS02590 at 538.662 kb on - strand at 538.662 kb on - strand at 538.662 kb on - strand at 538.662 kb on - strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.704 kb on - strand at 538.704 kb on - strand at 538.874 kb on + strand at 538.874 kb on + strand at 538.874 kb on + strand at 538.874 kb on + strand at 538.874 kb on + strand at 538.874 kb on + strand at 538.875 kb on - strand at 538.875 kb on - strand at 538.937 kb on + strand at 538.937 kb on + strand at 538.937 kb on + strand at 538.937 kb on + strand at 538.937 kb on + strand at 538.938 kb on - strand at 539.245 kb on + strand at 539.245 kb on + strand at 539.246 kb on - strand at 539.246 kb on - strand at 539.246 kb on - strand at 539.246 kb on - strand at 539.246 kb on - strand at 539.440 kb on + strand, within AMB_RS02595 at 539.440 kb on + strand, within AMB_RS02595 at 539.452 kb on + strand, within AMB_RS02595 at 539.452 kb on + strand, within AMB_RS02595 at 539.452 kb on + strand, within AMB_RS02595 at 539.452 kb on + strand, within AMB_RS02595 at 539.453 kb on - strand, within AMB_RS02595 at 539.453 kb on - strand, within AMB_RS02595 at 539.456 kb on + strand, within AMB_RS02595 at 539.665 kb on + strand, within AMB_RS02595 at 539.665 kb on + strand, within AMB_RS02595 at 539.665 kb on + strand, within AMB_RS02595 at 539.666 kb on - strand, within AMB_RS02595
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_2 remove 536,747 + AMB_RS02585 0.63 +0.1 536,748 - AMB_RS02585 0.63 -0.3 536,748 - AMB_RS02585 0.63 -0.6 536,748 - AMB_RS02585 0.63 -0.2 536,748 - AMB_RS02585 0.63 -0.6 536,797 - AMB_RS02585 0.68 -1.2 537,101 + -0.5 537,102 - -0.5 537,563 + AMB_RS02590 0.26 -0.6 537,563 + AMB_RS02590 0.26 -2.8 537,563 + AMB_RS02590 0.26 +1.0 537,563 + AMB_RS02590 0.26 +0.2 537,564 - AMB_RS02590 0.26 -0.5 537,564 - AMB_RS02590 0.26 -0.1 537,564 - AMB_RS02590 0.26 +0.1 537,564 - AMB_RS02590 0.26 +0.2 537,564 - AMB_RS02590 0.26 -0.3 537,795 - AMB_RS02590 0.40 +0.2 537,795 - AMB_RS02590 0.40 -2.5 538,130 + AMB_RS02590 0.60 +1.9 538,131 - AMB_RS02590 0.60 +0.3 538,131 - AMB_RS02590 0.60 +0.1 538,595 + AMB_RS02590 0.88 +0.6 538,662 - +0.5 538,662 - -2.9 538,662 - +0.2 538,662 - -0.1 538,703 + -0.7 538,703 + -0.6 538,703 + +0.7 538,703 + +0.1 538,704 - -1.2 538,704 - +0.2 538,874 + -0.2 538,874 + -0.3 538,874 + -0.8 538,874 + +0.4 538,874 + +0.1 538,874 + +0.2 538,875 - -2.0 538,875 - -2.0 538,937 + +0.4 538,937 + +0.4 538,937 + +0.1 538,937 + -0.4 538,937 + +0.4 538,938 - -2.2 539,245 + +0.9 539,245 + -0.4 539,246 - -1.2 539,246 - -0.2 539,246 - +0.8 539,246 - -0.6 539,246 - +0.3 539,440 + AMB_RS02595 0.15 -0.8 539,440 + AMB_RS02595 0.15 -0.6 539,452 + AMB_RS02595 0.16 -0.4 539,452 + AMB_RS02595 0.16 +1.1 539,452 + AMB_RS02595 0.16 -0.2 539,452 + AMB_RS02595 0.16 -1.9 539,453 - AMB_RS02595 0.16 -0.3 539,453 - AMB_RS02595 0.16 -0.9 539,456 + AMB_RS02595 0.16 +0.2 539,665 + AMB_RS02595 0.24 +0.6 539,665 + AMB_RS02595 0.24 -0.8 539,665 + AMB_RS02595 0.24 -0.8 539,666 - AMB_RS02595 0.24 +0.1
Or see this region's nucleotide sequence