Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01335

Experiment: 30_mag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS01330 and AMB_RS01335 are separated by 157 nucleotidesAMB_RS01335 and AMB_RS01340 are separated by 1 nucleotidesAMB_RS01340 and AMB_RS01345 are separated by 51 nucleotides AMB_RS01330: AMB_RS01330 - glycosyltransferase family 39 protein, at 292,927 to 294,570 _RS01330 AMB_RS01335: AMB_RS01335 - methyl-accepting chemotaxis protein, at 294,728 to 296,539 _RS01335 AMB_RS01340: AMB_RS01340 - hypothetical protein, at 296,541 to 297,038 _RS01340 AMB_RS01345: AMB_RS01345 - glycosyltransferase family 1 protein, at 297,090 to 298,133 _RS01345 Position (kb) 294 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.756 kb on + strand, within AMB_RS01330at 293.970 kb on + strand, within AMB_RS01330at 294.092 kb on + strand, within AMB_RS01330at 294.236 kb on + strand, within AMB_RS01330at 294.237 kb on - strand, within AMB_RS01330at 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.416 kb on + strandat 294.417 kb on - strandat 294.506 kb on + strandat 294.754 kb on + strandat 294.754 kb on + strandat 294.840 kb on + strandat 294.840 kb on + strandat 294.841 kb on - strandat 294.953 kb on + strand, within AMB_RS01335at 294.954 kb on - strand, within AMB_RS01335at 294.954 kb on - strand, within AMB_RS01335at 294.954 kb on - strand, within AMB_RS01335at 295.217 kb on + strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 295.218 kb on - strand, within AMB_RS01335at 296.302 kb on + strand, within AMB_RS01335at 296.543 kb on - strandat 296.611 kb on + strand, within AMB_RS01340at 296.612 kb on - strand, within AMB_RS01340at 296.612 kb on - strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.680 kb on + strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.681 kb on - strand, within AMB_RS01340at 296.801 kb on + strand, within AMB_RS01340at 296.801 kb on + strand, within AMB_RS01340at 296.802 kb on - strand, within AMB_RS01340at 296.802 kb on - strand, within AMB_RS01340at 296.863 kb on + strand, within AMB_RS01340at 296.863 kb on + strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.864 kb on - strand, within AMB_RS01340at 296.914 kb on + strand, within AMB_RS01340at 296.914 kb on + strand, within AMB_RS01340at 296.915 kb on - strand, within AMB_RS01340at 296.956 kb on + strand, within AMB_RS01340at 296.957 kb on - strand, within AMB_RS01340at 297.086 kb on + strandat 297.087 kb on - strandat 297.132 kb on + strandat 297.133 kb on - strandat 297.302 kb on - strand, within AMB_RS01345at 297.398 kb on - strand, within AMB_RS01345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
remove
293,756 + AMB_RS01330 0.50 -3.5
293,756 + AMB_RS01330 0.50 +0.7
293,756 + AMB_RS01330 0.50 -0.8
293,756 + AMB_RS01330 0.50 +0.1
293,756 + AMB_RS01330 0.50 -2.4
293,756 + AMB_RS01330 0.50 +0.1
293,756 + AMB_RS01330 0.50 +0.1
293,756 + AMB_RS01330 0.50 +0.1
293,970 + AMB_RS01330 0.63 -2.8
294,092 + AMB_RS01330 0.71 +2.5
294,236 + AMB_RS01330 0.80 -0.9
294,237 - AMB_RS01330 0.80 -1.9
294,416 + +1.1
294,416 + +1.1
294,416 + -2.4
294,416 + -2.4
294,417 - -1.4
294,506 + -1.4
294,754 + -0.6
294,754 + -0.2
294,840 + -0.2
294,840 + +0.1
294,841 - +1.5
294,953 + AMB_RS01335 0.12 -0.6
294,954 - AMB_RS01335 0.12 -0.8
294,954 - AMB_RS01335 0.12 -0.3
294,954 - AMB_RS01335 0.12 +0.1
295,217 + AMB_RS01335 0.27 -0.4
295,218 - AMB_RS01335 0.27 -0.1
295,218 - AMB_RS01335 0.27 -0.3
295,218 - AMB_RS01335 0.27 -0.6
295,218 - AMB_RS01335 0.27 -0.0
295,218 - AMB_RS01335 0.27 +0.3
295,218 - AMB_RS01335 0.27 -1.7
296,302 + AMB_RS01335 0.87 +0.1
296,543 - -0.9
296,611 + AMB_RS01340 0.14 -0.4
296,612 - AMB_RS01340 0.14 -0.9
296,612 - AMB_RS01340 0.14 +0.0
296,680 + AMB_RS01340 0.28 +0.5
296,680 + AMB_RS01340 0.28 -0.2
296,680 + AMB_RS01340 0.28 -0.8
296,680 + AMB_RS01340 0.28 +0.7
296,680 + AMB_RS01340 0.28 -0.3
296,681 - AMB_RS01340 0.28 -1.0
296,681 - AMB_RS01340 0.28 +0.8
296,681 - AMB_RS01340 0.28 +0.6
296,681 - AMB_RS01340 0.28 -1.0
296,681 - AMB_RS01340 0.28 -0.1
296,681 - AMB_RS01340 0.28 +0.4
296,681 - AMB_RS01340 0.28 -0.1
296,681 - AMB_RS01340 0.28 +0.2
296,801 + AMB_RS01340 0.52 -0.6
296,801 + AMB_RS01340 0.52 -0.1
296,802 - AMB_RS01340 0.52 -0.8
296,802 - AMB_RS01340 0.52 +0.8
296,863 + AMB_RS01340 0.65 +1.1
296,863 + AMB_RS01340 0.65 -1.4
296,864 - AMB_RS01340 0.65 -0.9
296,864 - AMB_RS01340 0.65 -0.3
296,864 - AMB_RS01340 0.65 +0.3
296,864 - AMB_RS01340 0.65 -0.2
296,864 - AMB_RS01340 0.65 +1.1
296,914 + AMB_RS01340 0.75 -0.4
296,914 + AMB_RS01340 0.75 -0.3
296,915 - AMB_RS01340 0.75 +0.4
296,956 + AMB_RS01340 0.83 -1.9
296,957 - AMB_RS01340 0.84 -2.4
297,086 + -0.1
297,087 - +0.5
297,132 + -1.8
297,133 - -0.3
297,302 - AMB_RS01345 0.20 -0.3
297,398 - AMB_RS01345 0.30 +0.1

Or see this region's nucleotide sequence