Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01060

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01055 and AMB_RS01060 overlap by 1 nucleotidesAMB_RS01060 and AMB_RS01065 overlap by 1 nucleotides AMB_RS01055: AMB_RS01055 - hydrogenase 4 subunit F, at 233,042 to 234,532 _RS01055 AMB_RS01060: AMB_RS01060 - hydrogenase-4 component E, at 234,532 to 235,194 _RS01060 AMB_RS01065: AMB_RS01065 - formate hydrogenlyase, at 235,194 to 236,141 _RS01065 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 233.743 kb on - strand, within AMB_RS01055at 233.982 kb on + strand, within AMB_RS01055at 233.983 kb on - strand, within AMB_RS01055at 234.040 kb on - strand, within AMB_RS01055at 234.040 kb on - strand, within AMB_RS01055at 234.075 kb on + strand, within AMB_RS01055at 234.139 kb on + strand, within AMB_RS01055at 234.140 kb on - strand, within AMB_RS01055at 234.186 kb on + strand, within AMB_RS01055at 234.186 kb on + strand, within AMB_RS01055at 234.186 kb on + strand, within AMB_RS01055at 234.187 kb on - strand, within AMB_RS01055at 234.187 kb on - strand, within AMB_RS01055at 234.187 kb on - strand, within AMB_RS01055at 234.187 kb on - strand, within AMB_RS01055at 234.187 kb on - strand, within AMB_RS01055at 234.198 kb on + strand, within AMB_RS01055at 234.199 kb on - strand, within AMB_RS01055at 234.199 kb on - strand, within AMB_RS01055at 234.253 kb on - strand, within AMB_RS01055at 234.266 kb on + strand, within AMB_RS01055at 234.309 kb on + strand, within AMB_RS01055at 234.310 kb on - strand, within AMB_RS01055at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.013 kb on + strand, within AMB_RS01060at 235.014 kb on - strand, within AMB_RS01060at 235.014 kb on - strand, within AMB_RS01060at 235.014 kb on - strand, within AMB_RS01060at 235.014 kb on - strand, within AMB_RS01060at 235.014 kb on - strand, within AMB_RS01060at 235.014 kb on - strand, within AMB_RS01060at 235.118 kb on + strand, within AMB_RS01060at 235.119 kb on - strand, within AMB_RS01060at 235.175 kb on + strandat 235.175 kb on + strandat 235.176 kb on - strandat 235.176 kb on - strandat 235.213 kb on + strandat 235.213 kb on + strandat 235.213 kb on + strandat 235.933 kb on + strand, within AMB_RS01065at 235.934 kb on - strand, within AMB_RS01065at 235.934 kb on - strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 235.999 kb on + strand, within AMB_RS01065at 236.000 kb on - strand, within AMB_RS01065at 236.000 kb on - strand, within AMB_RS01065at 236.012 kb on - strand, within AMB_RS01065

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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233,743 - AMB_RS01055 0.47 +1.0
233,982 + AMB_RS01055 0.63 -1.1
233,983 - AMB_RS01055 0.63 -1.1
234,040 - AMB_RS01055 0.67 +0.3
234,040 - AMB_RS01055 0.67 -0.7
234,075 + AMB_RS01055 0.69 -0.2
234,139 + AMB_RS01055 0.74 -0.7
234,140 - AMB_RS01055 0.74 +0.0
234,186 + AMB_RS01055 0.77 -0.0
234,186 + AMB_RS01055 0.77 +0.4
234,186 + AMB_RS01055 0.77 -0.3
234,187 - AMB_RS01055 0.77 -0.4
234,187 - AMB_RS01055 0.77 -0.2
234,187 - AMB_RS01055 0.77 +0.0
234,187 - AMB_RS01055 0.77 -0.6
234,187 - AMB_RS01055 0.77 -1.2
234,198 + AMB_RS01055 0.78 -1.1
234,199 - AMB_RS01055 0.78 +0.4
234,199 - AMB_RS01055 0.78 -0.8
234,253 - AMB_RS01055 0.81 -1.0
234,266 + AMB_RS01055 0.82 +0.2
234,309 + AMB_RS01055 0.85 +0.2
234,310 - AMB_RS01055 0.85 -0.3
235,013 + AMB_RS01060 0.73 -0.7
235,013 + AMB_RS01060 0.73 -2.0
235,013 + AMB_RS01060 0.73 -0.2
235,013 + AMB_RS01060 0.73 -0.4
235,013 + AMB_RS01060 0.73 +1.2
235,013 + AMB_RS01060 0.73 -0.7
235,013 + AMB_RS01060 0.73 -0.6
235,013 + AMB_RS01060 0.73 -1.4
235,013 + AMB_RS01060 0.73 -0.7
235,013 + AMB_RS01060 0.73 +1.2
235,014 - AMB_RS01060 0.73 -1.5
235,014 - AMB_RS01060 0.73 -0.8
235,014 - AMB_RS01060 0.73 -0.2
235,014 - AMB_RS01060 0.73 -1.2
235,014 - AMB_RS01060 0.73 -0.8
235,014 - AMB_RS01060 0.73 -0.6
235,118 + AMB_RS01060 0.88 -0.8
235,119 - AMB_RS01060 0.89 -0.8
235,175 + +0.3
235,175 + -0.2
235,176 - -0.9
235,176 - +0.1
235,213 + -1.2
235,213 + +0.0
235,213 + +0.7
235,933 + AMB_RS01065 0.78 -0.3
235,934 - AMB_RS01065 0.78 +1.2
235,934 - AMB_RS01065 0.78 +0.1
235,999 + AMB_RS01065 0.85 -0.0
235,999 + AMB_RS01065 0.85 -0.8
235,999 + AMB_RS01065 0.85 +0.5
235,999 + AMB_RS01065 0.85 -0.1
235,999 + AMB_RS01065 0.85 +0.8
236,000 - AMB_RS01065 0.85 +0.4
236,000 - AMB_RS01065 0.85 -0.6
236,012 - AMB_RS01065 0.86 -0.2

Or see this region's nucleotide sequence