Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00935

Experiment: 30_mag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00930 and AMB_RS00935 are separated by 154 nucleotidesAMB_RS00935 and AMB_RS00940 are separated by 10 nucleotidesAMB_RS00940 and AMB_RS00945 overlap by 59 nucleotides AMB_RS00930: AMB_RS00930 - ABC transporter permease, at 210,748 to 211,890 _RS00930 AMB_RS00935: AMB_RS00935 - methyl-accepting chemotaxis protein, at 212,045 to 213,376 _RS00935 AMB_RS00940: AMB_RS00940 - PAS domain S-box protein, at 213,387 to 213,917 _RS00940 AMB_RS00945: AMB_RS00945 - hypothetical protein, at 213,859 to 214,929 _RS00945 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 211.276 kb on + strand, within AMB_RS00930at 211.276 kb on + strand, within AMB_RS00930at 211.300 kb on + strand, within AMB_RS00930at 211.300 kb on + strand, within AMB_RS00930at 211.300 kb on + strand, within AMB_RS00930at 211.301 kb on - strand, within AMB_RS00930at 211.301 kb on - strand, within AMB_RS00930at 211.301 kb on - strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.461 kb on + strand, within AMB_RS00930at 211.474 kb on + strand, within AMB_RS00930at 211.474 kb on + strand, within AMB_RS00930at 211.475 kb on - strand, within AMB_RS00930at 211.475 kb on - strand, within AMB_RS00930at 211.475 kb on - strand, within AMB_RS00930at 211.870 kb on + strandat 211.898 kb on - strandat 211.898 kb on - strandat 212.064 kb on + strandat 212.064 kb on + strandat 212.064 kb on + strandat 212.065 kb on - strandat 212.065 kb on - strandat 212.065 kb on - strandat 212.065 kb on - strandat 212.065 kb on - strandat 212.916 kb on + strand, within AMB_RS00935at 212.916 kb on + strand, within AMB_RS00935at 212.916 kb on + strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.955 kb on + strand, within AMB_RS00935at 212.955 kb on + strand, within AMB_RS00935at 212.956 kb on - strand, within AMB_RS00935at 212.964 kb on + strand, within AMB_RS00935at 212.965 kb on - strand, within AMB_RS00935at 212.965 kb on - strand, within AMB_RS00935at 213.388 kb on + strandat 213.418 kb on + strandat 213.418 kb on + strandat 213.418 kb on + strandat 213.418 kb on + strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.584 kb on - strand, within AMB_RS00940at 213.584 kb on - strand, within AMB_RS00940at 213.584 kb on - strand, within AMB_RS00940at 213.611 kb on - strand, within AMB_RS00940at 213.611 kb on - strand, within AMB_RS00940at 213.611 kb on - strand, within AMB_RS00940at 213.621 kb on + strand, within AMB_RS00940at 213.621 kb on + strand, within AMB_RS00940at 213.621 kb on + strand, within AMB_RS00940at 213.622 kb on - strand, within AMB_RS00940at 213.622 kb on - strand, within AMB_RS00940at 213.622 kb on - strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.790 kb on + strand, within AMB_RS00940at 213.791 kb on - strand, within AMB_RS00940at 213.823 kb on + strand, within AMB_RS00940at 213.827 kb on + strand, within AMB_RS00940at 213.828 kb on - strand, within AMB_RS00940at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.249 kb on + strand, within AMB_RS00945at 214.282 kb on + strand, within AMB_RS00945at 214.283 kb on - strand, within AMB_RS00945at 214.283 kb on - strand, within AMB_RS00945

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_mag_2
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211,276 + AMB_RS00930 0.46 +0.7
211,276 + AMB_RS00930 0.46 -0.4
211,300 + AMB_RS00930 0.48 +0.5
211,300 + AMB_RS00930 0.48 +1.2
211,300 + AMB_RS00930 0.48 -0.4
211,301 - AMB_RS00930 0.48 -0.4
211,301 - AMB_RS00930 0.48 -1.0
211,301 - AMB_RS00930 0.48 -1.2
211,459 + AMB_RS00930 0.62 -0.4
211,459 + AMB_RS00930 0.62 -0.6
211,459 + AMB_RS00930 0.62 -0.0
211,459 + AMB_RS00930 0.62 -0.1
211,460 - AMB_RS00930 0.62 +0.2
211,460 - AMB_RS00930 0.62 +0.2
211,460 - AMB_RS00930 0.62 -0.4
211,460 - AMB_RS00930 0.62 -0.3
211,460 - AMB_RS00930 0.62 -0.0
211,460 - AMB_RS00930 0.62 +0.8
211,460 - AMB_RS00930 0.62 +1.8
211,461 + AMB_RS00930 0.62 -0.2
211,474 + AMB_RS00930 0.64 -0.0
211,474 + AMB_RS00930 0.64 +0.5
211,475 - AMB_RS00930 0.64 +0.6
211,475 - AMB_RS00930 0.64 -0.8
211,475 - AMB_RS00930 0.64 +0.2
211,870 + +0.5
211,898 - +0.1
211,898 - +1.8
212,064 + -0.3
212,064 + +1.0
212,064 + +0.3
212,065 - -0.3
212,065 - -0.4
212,065 - +0.2
212,065 - -0.4
212,065 - -0.6
212,916 + AMB_RS00935 0.65 -0.0
212,916 + AMB_RS00935 0.65 -0.6
212,916 + AMB_RS00935 0.65 +0.4
212,917 - AMB_RS00935 0.65 +0.2
212,917 - AMB_RS00935 0.65 -0.5
212,917 - AMB_RS00935 0.65 +0.2
212,917 - AMB_RS00935 0.65 +0.2
212,955 + AMB_RS00935 0.68 +0.2
212,955 + AMB_RS00935 0.68 +0.5
212,956 - AMB_RS00935 0.68 -0.2
212,964 + AMB_RS00935 0.69 +0.7
212,965 - AMB_RS00935 0.69 -0.4
212,965 - AMB_RS00935 0.69 -0.2
213,388 + +1.7
213,418 + +1.2
213,418 + +0.7
213,418 + -0.2
213,418 + -0.1
213,419 - +0.6
213,419 - -0.0
213,419 - +0.1
213,419 - -0.8
213,419 - -0.4
213,419 - +0.4
213,419 - +0.2
213,419 - -0.1
213,419 - -0.2
213,419 - -0.4
213,419 - -0.2
213,526 + AMB_RS00940 0.26 -0.5
213,526 + AMB_RS00940 0.26 -0.7
213,526 + AMB_RS00940 0.26 -0.1
213,526 + AMB_RS00940 0.26 +0.0
213,526 + AMB_RS00940 0.26 -1.2
213,584 - AMB_RS00940 0.37 +0.4
213,584 - AMB_RS00940 0.37 -0.8
213,584 - AMB_RS00940 0.37 -0.5
213,611 - AMB_RS00940 0.42 -0.3
213,611 - AMB_RS00940 0.42 +1.4
213,611 - AMB_RS00940 0.42 -0.4
213,621 + AMB_RS00940 0.44 -0.8
213,621 + AMB_RS00940 0.44 -0.3
213,621 + AMB_RS00940 0.44 -0.0
213,622 - AMB_RS00940 0.44 +0.2
213,622 - AMB_RS00940 0.44 -2.2
213,622 - AMB_RS00940 0.44 -0.7
213,673 + AMB_RS00940 0.54 +0.7
213,673 + AMB_RS00940 0.54 +2.2
213,673 + AMB_RS00940 0.54 +0.9
213,673 + AMB_RS00940 0.54 -0.7
213,673 + AMB_RS00940 0.54 -0.2
213,674 - AMB_RS00940 0.54 +0.2
213,674 - AMB_RS00940 0.54 -0.6
213,674 - AMB_RS00940 0.54 -1.9
213,674 - AMB_RS00940 0.54 -0.8
213,790 + AMB_RS00940 0.76 +0.4
213,791 - AMB_RS00940 0.76 -0.4
213,823 + AMB_RS00940 0.82 -0.0
213,827 + AMB_RS00940 0.83 +0.7
213,828 - AMB_RS00940 0.83 +0.1
214,115 + AMB_RS00945 0.24 +1.5
214,115 + AMB_RS00945 0.24 +2.0
214,115 + AMB_RS00945 0.24 +0.6
214,115 + AMB_RS00945 0.24 -0.5
214,115 + AMB_RS00945 0.24 +2.5
214,115 + AMB_RS00945 0.24 -2.1
214,115 + AMB_RS00945 0.24 -3.2
214,115 + AMB_RS00945 0.24 +0.4
214,115 + AMB_RS00945 0.24 -1.8
214,115 + AMB_RS00945 0.24 -0.1
214,115 + AMB_RS00945 0.24 -0.5
214,115 + AMB_RS00945 0.24 +0.7
214,116 - AMB_RS00945 0.24 +0.2
214,116 - AMB_RS00945 0.24 -0.8
214,116 - AMB_RS00945 0.24 +0.3
214,116 - AMB_RS00945 0.24 -0.3
214,116 - AMB_RS00945 0.24 -0.3
214,116 - AMB_RS00945 0.24 -0.2
214,116 - AMB_RS00945 0.24 -0.7
214,249 + AMB_RS00945 0.36 +0.2
214,282 + AMB_RS00945 0.39 -0.0
214,283 - AMB_RS00945 0.40 -0.0
214,283 - AMB_RS00945 0.40 -1.1

Or see this region's nucleotide sequence