Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19775

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19760 and ABIE41_RS19765 overlap by 8 nucleotidesABIE41_RS19765 and ABIE41_RS19770 are separated by 19 nucleotidesABIE41_RS19770 and ABIE41_RS19775 are separated by 1 nucleotidesABIE41_RS19775 and ABIE41_RS19780 are separated by 56 nucleotides ABIE41_RS19760: ABIE41_RS19760 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 4,056,890 to 4,058,035 _RS19760 ABIE41_RS19765: ABIE41_RS19765 - transcriptional regulator NrdR, at 4,058,028 to 4,058,525 _RS19765 ABIE41_RS19770: ABIE41_RS19770 - PIN domain-containing protein, at 4,058,545 to 4,058,988 _RS19770 ABIE41_RS19775: ABIE41_RS19775 - hypothetical protein, at 4,058,990 to 4,059,223 _RS19775 ABIE41_RS19780: ABIE41_RS19780 - serine hydroxymethyltransferase, at 4,059,280 to 4,060,581 _RS19780 Position (kb) 4058 4059 4060Strain fitness (log2 ratio) -1 0 1at 4058.576 kb on - strandat 4058.576 kb on - strandat 4059.250 kb on - strandat 4059.284 kb on + strandat 4059.284 kb on + strandat 4059.284 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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4,058,576 - -0.6
4,058,576 - +1.6
4,059,250 - +0.5
4,059,284 + -0.1
4,059,284 + +0.2
4,059,284 + +0.5

Or see this region's nucleotide sequence