Strain Fitness in Bosea sp. OAE506 around ABIE41_RS19290

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS19285 and ABIE41_RS19290 are separated by 134 nucleotidesABIE41_RS19290 and ABIE41_RS19295 are separated by 6 nucleotides ABIE41_RS19285: ABIE41_RS19285 - polysaccharide deacetylase family protein, at 3,978,251 to 3,979,303 _RS19285 ABIE41_RS19290: ABIE41_RS19290 - GNAT family N-acetyltransferase, at 3,979,438 to 3,980,688 _RS19290 ABIE41_RS19295: ABIE41_RS19295 - GumC family protein, at 3,980,695 to 3,982,872 _RS19295 Position (kb) 3979 3980 3981Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3978.772 kb on - strand, within ABIE41_RS19285at 3979.388 kb on + strandat 3979.396 kb on + strandat 3979.792 kb on + strand, within ABIE41_RS19290at 3979.792 kb on + strand, within ABIE41_RS19290at 3979.792 kb on + strand, within ABIE41_RS19290at 3979.792 kb on + strand, within ABIE41_RS19290at 3979.797 kb on + strand, within ABIE41_RS19290at 3979.797 kb on + strand, within ABIE41_RS19290at 3979.797 kb on + strand, within ABIE41_RS19290at 3979.798 kb on - strand, within ABIE41_RS19290at 3979.798 kb on - strand, within ABIE41_RS19290at 3979.798 kb on - strand, within ABIE41_RS19290at 3979.798 kb on - strand, within ABIE41_RS19290at 3979.798 kb on - strand, within ABIE41_RS19290at 3979.807 kb on + strand, within ABIE41_RS19290at 3979.808 kb on - strand, within ABIE41_RS19290at 3979.984 kb on + strand, within ABIE41_RS19290at 3979.985 kb on - strand, within ABIE41_RS19290at 3979.985 kb on - strand, within ABIE41_RS19290at 3979.985 kb on - strand, within ABIE41_RS19290at 3980.281 kb on + strand, within ABIE41_RS19290at 3980.317 kb on + strand, within ABIE41_RS19290at 3980.317 kb on + strand, within ABIE41_RS19290at 3980.317 kb on + strand, within ABIE41_RS19290at 3980.317 kb on + strand, within ABIE41_RS19290at 3980.317 kb on + strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.318 kb on - strand, within ABIE41_RS19290at 3980.687 kb on - strandat 3980.687 kb on - strandat 3980.687 kb on - strandat 3980.687 kb on - strandat 3980.799 kb on - strandat 3980.927 kb on + strand, within ABIE41_RS19295at 3980.927 kb on + strand, within ABIE41_RS19295at 3980.927 kb on + strand, within ABIE41_RS19295at 3980.928 kb on - strand, within ABIE41_RS19295at 3980.928 kb on - strand, within ABIE41_RS19295at 3980.928 kb on - strand, within ABIE41_RS19295at 3980.928 kb on - strand, within ABIE41_RS19295at 3981.644 kb on + strand, within ABIE41_RS19295at 3981.644 kb on + strand, within ABIE41_RS19295at 3981.644 kb on + strand, within ABIE41_RS19295at 3981.645 kb on - strand, within ABIE41_RS19295at 3981.645 kb on - strand, within ABIE41_RS19295at 3981.645 kb on - strand, within ABIE41_RS19295at 3981.645 kb on - strand, within ABIE41_RS19295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,978,772 - ABIE41_RS19285 0.49 -2.0
3,979,388 + +0.5
3,979,396 + -1.4
3,979,792 + ABIE41_RS19290 0.28 -1.1
3,979,792 + ABIE41_RS19290 0.28 -0.2
3,979,792 + ABIE41_RS19290 0.28 -1.0
3,979,792 + ABIE41_RS19290 0.28 +0.1
3,979,797 + ABIE41_RS19290 0.29 +0.5
3,979,797 + ABIE41_RS19290 0.29 -0.4
3,979,797 + ABIE41_RS19290 0.29 +1.8
3,979,798 - ABIE41_RS19290 0.29 +0.1
3,979,798 - ABIE41_RS19290 0.29 -1.4
3,979,798 - ABIE41_RS19290 0.29 +0.9
3,979,798 - ABIE41_RS19290 0.29 +0.0
3,979,798 - ABIE41_RS19290 0.29 +0.6
3,979,807 + ABIE41_RS19290 0.29 +0.1
3,979,808 - ABIE41_RS19290 0.30 -0.9
3,979,984 + ABIE41_RS19290 0.44 +0.2
3,979,985 - ABIE41_RS19290 0.44 +0.1
3,979,985 - ABIE41_RS19290 0.44 -0.3
3,979,985 - ABIE41_RS19290 0.44 +1.3
3,980,281 + ABIE41_RS19290 0.67 +0.4
3,980,317 + ABIE41_RS19290 0.70 +0.2
3,980,317 + ABIE41_RS19290 0.70 +0.6
3,980,317 + ABIE41_RS19290 0.70 -0.8
3,980,317 + ABIE41_RS19290 0.70 -1.7
3,980,317 + ABIE41_RS19290 0.70 +0.2
3,980,318 - ABIE41_RS19290 0.70 +0.6
3,980,318 - ABIE41_RS19290 0.70 -0.4
3,980,318 - ABIE41_RS19290 0.70 +0.7
3,980,318 - ABIE41_RS19290 0.70 -0.8
3,980,318 - ABIE41_RS19290 0.70 +1.1
3,980,318 - ABIE41_RS19290 0.70 +0.2
3,980,318 - ABIE41_RS19290 0.70 -0.6
3,980,318 - ABIE41_RS19290 0.70 +0.5
3,980,687 - -0.2
3,980,687 - -0.9
3,980,687 - -1.6
3,980,687 - +0.2
3,980,799 - +0.8
3,980,927 + ABIE41_RS19295 0.11 +1.4
3,980,927 + ABIE41_RS19295 0.11 +0.2
3,980,927 + ABIE41_RS19295 0.11 -0.6
3,980,928 - ABIE41_RS19295 0.11 +0.2
3,980,928 - ABIE41_RS19295 0.11 +0.4
3,980,928 - ABIE41_RS19295 0.11 -1.5
3,980,928 - ABIE41_RS19295 0.11 -0.4
3,981,644 + ABIE41_RS19295 0.44 +0.3
3,981,644 + ABIE41_RS19295 0.44 +0.8
3,981,644 + ABIE41_RS19295 0.44 -0.1
3,981,645 - ABIE41_RS19295 0.44 -3.0
3,981,645 - ABIE41_RS19295 0.44 +0.4
3,981,645 - ABIE41_RS19295 0.44 +0.5
3,981,645 - ABIE41_RS19295 0.44 +1.0

Or see this region's nucleotide sequence