Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17855

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17845 and ABIE41_RS17850 are separated by 401 nucleotidesABIE41_RS17850 and ABIE41_RS17855 overlap by 4 nucleotidesABIE41_RS17855 and ABIE41_RS17860 are separated by 4 nucleotidesABIE41_RS17860 and ABIE41_RS17865 are separated by 28 nucleotides ABIE41_RS17845: ABIE41_RS17845 - peptidylprolyl isomerase, at 3,675,883 to 3,676,437 _RS17845 ABIE41_RS17850: ABIE41_RS17850 - DUF1467 family protein, at 3,676,839 to 3,677,069 _RS17850 ABIE41_RS17855: ABIE41_RS17855 - RidA family protein, at 3,677,066 to 3,677,476 _RS17855 ABIE41_RS17860: ABIE41_RS17860 - methylmalonyl-CoA epimerase, at 3,677,481 to 3,677,885 _RS17860 ABIE41_RS17865: ABIE41_RS17865 - ribonuclease J, at 3,677,914 to 3,679,584 _RS17865 Position (kb) 3677 3678Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3676.115 kb on + strand, within ABIE41_RS17845at 3676.115 kb on + strand, within ABIE41_RS17845at 3676.238 kb on + strand, within ABIE41_RS17845at 3676.707 kb on - strandat 3676.865 kb on - strand, within ABIE41_RS17850at 3677.191 kb on - strand, within ABIE41_RS17855at 3677.191 kb on - strand, within ABIE41_RS17855at 3677.211 kb on + strand, within ABIE41_RS17855at 3677.211 kb on + strand, within ABIE41_RS17855at 3677.212 kb on - strand, within ABIE41_RS17855at 3677.212 kb on - strand, within ABIE41_RS17855at 3677.915 kb on + strandat 3677.916 kb on - strandat 3678.074 kb on + strandat 3678.074 kb on + strandat 3678.261 kb on - strand, within ABIE41_RS17865at 3678.261 kb on - strand, within ABIE41_RS17865at 3678.443 kb on + strand, within ABIE41_RS17865at 3678.443 kb on + strand, within ABIE41_RS17865at 3678.444 kb on - strand, within ABIE41_RS17865

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,676,115 + ABIE41_RS17845 0.42 +0.2
3,676,115 + ABIE41_RS17845 0.42 +1.1
3,676,238 + ABIE41_RS17845 0.64 -0.4
3,676,707 - +0.3
3,676,865 - ABIE41_RS17850 0.11 +1.7
3,677,191 - ABIE41_RS17855 0.30 -1.8
3,677,191 - ABIE41_RS17855 0.30 +2.4
3,677,211 + ABIE41_RS17855 0.35 -2.8
3,677,211 + ABIE41_RS17855 0.35 +0.4
3,677,212 - ABIE41_RS17855 0.36 +1.1
3,677,212 - ABIE41_RS17855 0.36 +0.3
3,677,915 + -0.8
3,677,916 - -0.4
3,678,074 + +0.1
3,678,074 + +0.5
3,678,261 - ABIE41_RS17865 0.21 +0.4
3,678,261 - ABIE41_RS17865 0.21 -1.4
3,678,443 + ABIE41_RS17865 0.32 -0.5
3,678,443 + ABIE41_RS17865 0.32 -1.0
3,678,444 - ABIE41_RS17865 0.32 +0.3

Or see this region's nucleotide sequence