Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS09030 and ABIE41_RS09035 are separated by 28 nucleotides ABIE41_RS09035 and ABIE41_RS09040 are separated by 126 nucleotides ABIE41_RS09040 and ABIE41_RS09045 overlap by 4 nucleotides
ABIE41_RS09030: ABIE41_RS09030 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,871,878 to 1,873,152
_RS09030
ABIE41_RS09035: ABIE41_RS09035 - transcriptional repressor, at 1,873,181 to 1,873,723
_RS09035
ABIE41_RS09040: ABIE41_RS09040 - 3-hydroxybutyrate dehydrogenase, at 1,873,850 to 1,874,635
_RS09040
ABIE41_RS09045: ABIE41_RS09045 - patatin-like phospholipase family protein, at 1,874,632 to 1,875,702
_RS09045
Position (kb) 1873
1874 Strain fitness (log2 ratio) -1
0
1
2 at 1873.384 kb on - strand, within ABIE41_RS09035 at 1873.447 kb on - strand, within ABIE41_RS09035 at 1873.593 kb on - strand, within ABIE41_RS09035 at 1873.593 kb on - strand, within ABIE41_RS09035 at 1873.812 kb on - strand at 1873.911 kb on - strand at 1873.911 kb on - strand at 1874.315 kb on + strand, within ABIE41_RS09040 at 1874.316 kb on - strand, within ABIE41_RS09040 at 1874.316 kb on - strand, within ABIE41_RS09040 at 1874.316 kb on - strand, within ABIE41_RS09040 at 1874.411 kb on + strand, within ABIE41_RS09040 at 1874.411 kb on + strand, within ABIE41_RS09040 at 1874.411 kb on + strand, within ABIE41_RS09040 at 1874.412 kb on - strand, within ABIE41_RS09040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,873,384 - ABIE41_RS09035 0.37 +2.1 1,873,447 - ABIE41_RS09035 0.49 +0.6 1,873,593 - ABIE41_RS09035 0.76 -0.4 1,873,593 - ABIE41_RS09035 0.76 +1.0 1,873,812 - -1.5 1,873,911 - +0.4 1,873,911 - -0.8 1,874,315 + ABIE41_RS09040 0.59 +0.7 1,874,316 - ABIE41_RS09040 0.59 +1.9 1,874,316 - ABIE41_RS09040 0.59 +0.2 1,874,316 - ABIE41_RS09040 0.59 +1.0 1,874,411 + ABIE41_RS09040 0.71 -0.6 1,874,411 + ABIE41_RS09040 0.71 +1.1 1,874,411 + ABIE41_RS09040 0.71 +1.0 1,874,412 - ABIE41_RS09040 0.72 +0.3
Or see this region's nucleotide sequence