Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07925

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07915 and ABIE41_RS07920 are separated by 129 nucleotidesABIE41_RS07920 and ABIE41_RS07925 are separated by 22 nucleotidesABIE41_RS07925 and ABIE41_RS07930 are separated by 296 nucleotides ABIE41_RS07915: ABIE41_RS07915 - bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA, at 1,626,168 to 1,629,260 _RS07915 ABIE41_RS07920: ABIE41_RS07920 - Lrp/AsnC ligand binding domain-containing protein, at 1,629,390 to 1,629,845 _RS07920 ABIE41_RS07925: ABIE41_RS07925 - TerC family protein, at 1,629,868 to 1,630,878 _RS07925 ABIE41_RS07930: ABIE41_RS07930 - ABC transporter substrate-binding protein, at 1,631,175 to 1,632,236 _RS07930 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1629.067 kb on + strandat 1629.192 kb on + strandat 1629.192 kb on + strandat 1629.193 kb on - strandat 1629.319 kb on - strandat 1629.348 kb on + strandat 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.528 kb on + strand, within ABIE41_RS07920at 1629.529 kb on - strand, within ABIE41_RS07920at 1629.529 kb on - strand, within ABIE41_RS07920at 1629.529 kb on - strand, within ABIE41_RS07920at 1629.702 kb on + strand, within ABIE41_RS07920at 1629.702 kb on + strand, within ABIE41_RS07920at 1629.702 kb on + strand, within ABIE41_RS07920at 1629.703 kb on - strand, within ABIE41_RS07920at 1629.798 kb on + strand, within ABIE41_RS07920at 1629.798 kb on + strand, within ABIE41_RS07920at 1629.799 kb on - strand, within ABIE41_RS07920at 1629.799 kb on - strand, within ABIE41_RS07920at 1629.866 kb on + strandat 1629.867 kb on - strandat 1630.052 kb on + strand, within ABIE41_RS07925at 1630.052 kb on + strand, within ABIE41_RS07925at 1630.052 kb on + strand, within ABIE41_RS07925at 1630.053 kb on - strand, within ABIE41_RS07925at 1630.088 kb on + strand, within ABIE41_RS07925at 1630.241 kb on + strand, within ABIE41_RS07925at 1630.241 kb on + strand, within ABIE41_RS07925at 1630.241 kb on + strand, within ABIE41_RS07925at 1630.359 kb on + strand, within ABIE41_RS07925at 1630.359 kb on + strand, within ABIE41_RS07925at 1630.359 kb on + strand, within ABIE41_RS07925at 1630.360 kb on - strand, within ABIE41_RS07925at 1630.360 kb on - strand, within ABIE41_RS07925at 1630.442 kb on + strand, within ABIE41_RS07925at 1630.443 kb on - strand, within ABIE41_RS07925at 1630.443 kb on - strand, within ABIE41_RS07925at 1630.532 kb on + strand, within ABIE41_RS07925at 1630.625 kb on + strand, within ABIE41_RS07925at 1630.626 kb on - strand, within ABIE41_RS07925at 1630.626 kb on - strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.721 kb on + strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.722 kb on - strand, within ABIE41_RS07925at 1630.890 kb on + strandat 1630.890 kb on + strandat 1630.891 kb on - strandat 1630.968 kb on + strandat 1631.170 kb on + strandat 1631.170 kb on + strandat 1631.170 kb on + strandat 1631.170 kb on + strandat 1631.170 kb on + strandat 1631.171 kb on - strandat 1631.171 kb on - strandat 1631.370 kb on + strand, within ABIE41_RS07930at 1631.370 kb on + strand, within ABIE41_RS07930at 1631.371 kb on - strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.541 kb on + strand, within ABIE41_RS07930at 1631.542 kb on - strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.854 kb on - strand, within ABIE41_RS07930

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,629,067 + -0.5
1,629,192 + +1.1
1,629,192 + -3.2
1,629,193 - -2.8
1,629,319 - -1.0
1,629,348 + -0.2
1,629,528 + ABIE41_RS07920 0.30 -0.4
1,629,528 + ABIE41_RS07920 0.30 -0.0
1,629,528 + ABIE41_RS07920 0.30 -0.0
1,629,528 + ABIE41_RS07920 0.30 +0.2
1,629,528 + ABIE41_RS07920 0.30 +1.1
1,629,528 + ABIE41_RS07920 0.30 +1.0
1,629,529 - ABIE41_RS07920 0.30 -3.1
1,629,529 - ABIE41_RS07920 0.30 -0.1
1,629,529 - ABIE41_RS07920 0.30 -2.4
1,629,702 + ABIE41_RS07920 0.68 -0.8
1,629,702 + ABIE41_RS07920 0.68 -2.5
1,629,702 + ABIE41_RS07920 0.68 +0.3
1,629,703 - ABIE41_RS07920 0.69 -1.2
1,629,798 + ABIE41_RS07920 0.89 -0.8
1,629,798 + ABIE41_RS07920 0.89 -2.7
1,629,799 - ABIE41_RS07920 0.90 -1.0
1,629,799 - ABIE41_RS07920 0.90 +0.7
1,629,866 + -1.5
1,629,867 - +1.4
1,630,052 + ABIE41_RS07925 0.18 -1.2
1,630,052 + ABIE41_RS07925 0.18 -1.2
1,630,052 + ABIE41_RS07925 0.18 +1.4
1,630,053 - ABIE41_RS07925 0.18 +1.0
1,630,088 + ABIE41_RS07925 0.22 +0.5
1,630,241 + ABIE41_RS07925 0.37 +0.4
1,630,241 + ABIE41_RS07925 0.37 +1.4
1,630,241 + ABIE41_RS07925 0.37 +0.7
1,630,359 + ABIE41_RS07925 0.49 +0.0
1,630,359 + ABIE41_RS07925 0.49 -0.2
1,630,359 + ABIE41_RS07925 0.49 -0.5
1,630,360 - ABIE41_RS07925 0.49 +1.2
1,630,360 - ABIE41_RS07925 0.49 +0.4
1,630,442 + ABIE41_RS07925 0.57 +2.0
1,630,443 - ABIE41_RS07925 0.57 -1.0
1,630,443 - ABIE41_RS07925 0.57 +0.5
1,630,532 + ABIE41_RS07925 0.66 +0.8
1,630,625 + ABIE41_RS07925 0.75 +1.5
1,630,626 - ABIE41_RS07925 0.75 +0.2
1,630,626 - ABIE41_RS07925 0.75 +0.8
1,630,721 + ABIE41_RS07925 0.84 -2.5
1,630,721 + ABIE41_RS07925 0.84 +0.2
1,630,721 + ABIE41_RS07925 0.84 -3.4
1,630,721 + ABIE41_RS07925 0.84 -1.8
1,630,721 + ABIE41_RS07925 0.84 +1.2
1,630,721 + ABIE41_RS07925 0.84 +0.6
1,630,721 + ABIE41_RS07925 0.84 +0.6
1,630,721 + ABIE41_RS07925 0.84 +0.3
1,630,722 - ABIE41_RS07925 0.84 +0.3
1,630,722 - ABIE41_RS07925 0.84 -1.4
1,630,722 - ABIE41_RS07925 0.84 +0.7
1,630,722 - ABIE41_RS07925 0.84 -1.0
1,630,722 - ABIE41_RS07925 0.84 +0.4
1,630,890 + -2.1
1,630,890 + +0.0
1,630,891 - +0.1
1,630,968 + -0.2
1,631,170 + -0.1
1,631,170 + -1.1
1,631,170 + +0.5
1,631,170 + +0.6
1,631,170 + +0.7
1,631,171 - -0.2
1,631,171 - +0.5
1,631,370 + ABIE41_RS07930 0.18 -0.0
1,631,370 + ABIE41_RS07930 0.18 -0.8
1,631,371 - ABIE41_RS07930 0.18 +2.3
1,631,454 + ABIE41_RS07930 0.26 +0.9
1,631,454 + ABIE41_RS07930 0.26 -2.7
1,631,454 + ABIE41_RS07930 0.26 -1.2
1,631,454 + ABIE41_RS07930 0.26 -1.3
1,631,454 + ABIE41_RS07930 0.26 +0.2
1,631,454 + ABIE41_RS07930 0.26 +1.8
1,631,454 + ABIE41_RS07930 0.26 -1.3
1,631,454 + ABIE41_RS07930 0.26 -1.3
1,631,454 + ABIE41_RS07930 0.26 -0.6
1,631,454 + ABIE41_RS07930 0.26 +1.2
1,631,454 + ABIE41_RS07930 0.26 +0.2
1,631,455 - ABIE41_RS07930 0.26 -0.4
1,631,455 - ABIE41_RS07930 0.26 -0.2
1,631,455 - ABIE41_RS07930 0.26 -1.4
1,631,455 - ABIE41_RS07930 0.26 +0.6
1,631,455 - ABIE41_RS07930 0.26 -0.9
1,631,455 - ABIE41_RS07930 0.26 +0.0
1,631,455 - ABIE41_RS07930 0.26 -2.1
1,631,455 - ABIE41_RS07930 0.26 +0.1
1,631,455 - ABIE41_RS07930 0.26 +1.0
1,631,455 - ABIE41_RS07930 0.26 +0.1
1,631,455 - ABIE41_RS07930 0.26 +0.4
1,631,455 - ABIE41_RS07930 0.26 -0.0
1,631,455 - ABIE41_RS07930 0.26 -0.0
1,631,455 - ABIE41_RS07930 0.26 -4.1
1,631,541 + ABIE41_RS07930 0.34 +0.2
1,631,542 - ABIE41_RS07930 0.35 -0.2
1,631,790 + ABIE41_RS07930 0.58 -1.5
1,631,790 + ABIE41_RS07930 0.58 -2.9
1,631,790 + ABIE41_RS07930 0.58 +0.6
1,631,790 + ABIE41_RS07930 0.58 +0.2
1,631,790 + ABIE41_RS07930 0.58 -0.1
1,631,791 - ABIE41_RS07930 0.58 +0.8
1,631,791 - ABIE41_RS07930 0.58 -0.7
1,631,791 - ABIE41_RS07930 0.58 -0.1
1,631,791 - ABIE41_RS07930 0.58 -0.2
1,631,791 - ABIE41_RS07930 0.58 -0.6
1,631,854 - ABIE41_RS07930 0.64 +0.2

Or see this region's nucleotide sequence