Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05260

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05255 and ABIE41_RS05260 are separated by 169 nucleotidesABIE41_RS05260 and ABIE41_RS05265 are separated by 23 nucleotides ABIE41_RS05255: ABIE41_RS05255 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 1,087,383 to 1,088,447 _RS05255 ABIE41_RS05260: ABIE41_RS05260 - TIM-barrel domain-containing protein, at 1,088,617 to 1,090,905 _RS05260 ABIE41_RS05265: ABIE41_RS05265 - LysR substrate-binding domain-containing protein, at 1,090,929 to 1,091,831 _RS05265 Position (kb) 1088 1089 1090 1091Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1087.632 kb on + strand, within ABIE41_RS05255at 1087.633 kb on - strand, within ABIE41_RS05255at 1087.649 kb on + strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.650 kb on - strand, within ABIE41_RS05255at 1087.659 kb on + strand, within ABIE41_RS05255at 1087.659 kb on + strand, within ABIE41_RS05255at 1087.660 kb on - strand, within ABIE41_RS05255at 1087.660 kb on - strand, within ABIE41_RS05255at 1087.688 kb on + strand, within ABIE41_RS05255at 1087.689 kb on - strand, within ABIE41_RS05255at 1087.689 kb on - strand, within ABIE41_RS05255at 1087.689 kb on - strand, within ABIE41_RS05255at 1087.759 kb on - strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.947 kb on + strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1087.948 kb on - strand, within ABIE41_RS05255at 1088.046 kb on + strand, within ABIE41_RS05255at 1088.046 kb on + strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.047 kb on - strand, within ABIE41_RS05255at 1088.298 kb on + strand, within ABIE41_RS05255at 1088.298 kb on + strand, within ABIE41_RS05255at 1088.299 kb on - strand, within ABIE41_RS05255at 1088.299 kb on - strand, within ABIE41_RS05255at 1088.299 kb on - strand, within ABIE41_RS05255at 1088.594 kb on - strandat 1088.641 kb on + strandat 1088.642 kb on - strandat 1088.806 kb on + strandat 1088.807 kb on - strandat 1088.807 kb on - strandat 1088.995 kb on + strand, within ABIE41_RS05260at 1088.995 kb on + strand, within ABIE41_RS05260at 1088.995 kb on + strand, within ABIE41_RS05260at 1088.995 kb on + strand, within ABIE41_RS05260at 1088.995 kb on + strand, within ABIE41_RS05260at 1088.995 kb on + strand, within ABIE41_RS05260at 1088.995 kb on + strand, within ABIE41_RS05260at 1089.031 kb on + strand, within ABIE41_RS05260at 1089.031 kb on + strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.032 kb on - strand, within ABIE41_RS05260at 1089.047 kb on - strand, within ABIE41_RS05260at 1089.166 kb on + strand, within ABIE41_RS05260at 1089.166 kb on + strand, within ABIE41_RS05260at 1089.166 kb on + strand, within ABIE41_RS05260at 1089.166 kb on + strand, within ABIE41_RS05260at 1089.166 kb on + strand, within ABIE41_RS05260at 1089.224 kb on - strand, within ABIE41_RS05260at 1089.224 kb on - strand, within ABIE41_RS05260at 1089.224 kb on - strand, within ABIE41_RS05260at 1089.224 kb on - strand, within ABIE41_RS05260at 1089.274 kb on + strand, within ABIE41_RS05260at 1089.274 kb on + strand, within ABIE41_RS05260at 1089.274 kb on + strand, within ABIE41_RS05260at 1089.274 kb on + strand, within ABIE41_RS05260at 1089.274 kb on + strand, within ABIE41_RS05260at 1089.275 kb on - strand, within ABIE41_RS05260at 1089.275 kb on - strand, within ABIE41_RS05260at 1089.325 kb on + strand, within ABIE41_RS05260at 1089.325 kb on + strand, within ABIE41_RS05260at 1089.325 kb on + strand, within ABIE41_RS05260at 1089.325 kb on + strand, within ABIE41_RS05260at 1089.326 kb on - strand, within ABIE41_RS05260at 1089.326 kb on - strand, within ABIE41_RS05260at 1089.326 kb on - strand, within ABIE41_RS05260at 1089.326 kb on - strand, within ABIE41_RS05260at 1089.412 kb on + strand, within ABIE41_RS05260at 1089.412 kb on + strand, within ABIE41_RS05260at 1089.413 kb on - strand, within ABIE41_RS05260at 1089.539 kb on - strand, within ABIE41_RS05260at 1089.539 kb on - strand, within ABIE41_RS05260at 1089.539 kb on - strand, within ABIE41_RS05260at 1089.784 kb on + strand, within ABIE41_RS05260at 1089.785 kb on - strand, within ABIE41_RS05260at 1089.844 kb on + strand, within ABIE41_RS05260at 1089.845 kb on - strand, within ABIE41_RS05260at 1089.845 kb on - strand, within ABIE41_RS05260at 1089.880 kb on + strand, within ABIE41_RS05260at 1089.881 kb on - strand, within ABIE41_RS05260at 1090.021 kb on + strand, within ABIE41_RS05260at 1090.021 kb on + strand, within ABIE41_RS05260at 1090.022 kb on - strand, within ABIE41_RS05260at 1090.022 kb on - strand, within ABIE41_RS05260at 1090.022 kb on - strand, within ABIE41_RS05260at 1090.022 kb on - strand, within ABIE41_RS05260at 1090.022 kb on - strand, within ABIE41_RS05260at 1090.022 kb on - strand, within ABIE41_RS05260at 1090.061 kb on - strand, within ABIE41_RS05260at 1090.061 kb on - strand, within ABIE41_RS05260at 1090.112 kb on - strand, within ABIE41_RS05260at 1090.112 kb on - strand, within ABIE41_RS05260at 1090.112 kb on - strand, within ABIE41_RS05260at 1090.112 kb on - strand, within ABIE41_RS05260at 1090.300 kb on + strand, within ABIE41_RS05260at 1090.300 kb on + strand, within ABIE41_RS05260at 1090.360 kb on + strand, within ABIE41_RS05260at 1090.361 kb on - strand, within ABIE41_RS05260at 1090.366 kb on + strand, within ABIE41_RS05260at 1090.366 kb on + strand, within ABIE41_RS05260at 1090.367 kb on - strand, within ABIE41_RS05260at 1090.367 kb on - strand, within ABIE41_RS05260at 1090.367 kb on - strand, within ABIE41_RS05260at 1090.423 kb on + strand, within ABIE41_RS05260at 1090.424 kb on - strand, within ABIE41_RS05260at 1090.534 kb on + strand, within ABIE41_RS05260at 1090.535 kb on - strand, within ABIE41_RS05260at 1090.535 kb on - strand, within ABIE41_RS05260at 1090.561 kb on + strand, within ABIE41_RS05260at 1090.561 kb on + strand, within ABIE41_RS05260at 1090.562 kb on - strand, within ABIE41_RS05260at 1090.562 kb on - strand, within ABIE41_RS05260at 1090.744 kb on + strandat 1091.054 kb on - strand, within ABIE41_RS05265at 1091.054 kb on - strand, within ABIE41_RS05265at 1091.107 kb on + strand, within ABIE41_RS05265at 1091.108 kb on - strand, within ABIE41_RS05265at 1091.108 kb on - strand, within ABIE41_RS05265at 1091.108 kb on - strand, within ABIE41_RS05265at 1091.108 kb on - strand, within ABIE41_RS05265at 1091.320 kb on + strand, within ABIE41_RS05265at 1091.320 kb on + strand, within ABIE41_RS05265at 1091.321 kb on - strand, within ABIE41_RS05265at 1091.470 kb on - strand, within ABIE41_RS05265at 1091.470 kb on - strand, within ABIE41_RS05265at 1091.638 kb on + strand, within ABIE41_RS05265at 1091.638 kb on + strand, within ABIE41_RS05265at 1091.639 kb on - strand, within ABIE41_RS05265at 1091.799 kb on + strandat 1091.800 kb on - strandat 1091.800 kb on - strandat 1091.875 kb on - strandat 1091.877 kb on + strandat 1091.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,087,632 + ABIE41_RS05255 0.23 +0.1
1,087,633 - ABIE41_RS05255 0.23 -0.1
1,087,649 + ABIE41_RS05255 0.25 +1.2
1,087,650 - ABIE41_RS05255 0.25 -0.1
1,087,650 - ABIE41_RS05255 0.25 +0.5
1,087,650 - ABIE41_RS05255 0.25 +0.8
1,087,650 - ABIE41_RS05255 0.25 -0.4
1,087,659 + ABIE41_RS05255 0.26 -0.1
1,087,659 + ABIE41_RS05255 0.26 -0.1
1,087,660 - ABIE41_RS05255 0.26 +1.7
1,087,660 - ABIE41_RS05255 0.26 -0.7
1,087,688 + ABIE41_RS05255 0.29 +1.4
1,087,689 - ABIE41_RS05255 0.29 -0.4
1,087,689 - ABIE41_RS05255 0.29 +1.8
1,087,689 - ABIE41_RS05255 0.29 +1.6
1,087,759 - ABIE41_RS05255 0.35 -0.2
1,087,947 + ABIE41_RS05255 0.53 +0.4
1,087,947 + ABIE41_RS05255 0.53 +0.2
1,087,947 + ABIE41_RS05255 0.53 -2.2
1,087,947 + ABIE41_RS05255 0.53 +1.0
1,087,948 - ABIE41_RS05255 0.53 -0.2
1,087,948 - ABIE41_RS05255 0.53 +0.9
1,087,948 - ABIE41_RS05255 0.53 +0.8
1,087,948 - ABIE41_RS05255 0.53 -2.6
1,087,948 - ABIE41_RS05255 0.53 -0.4
1,087,948 - ABIE41_RS05255 0.53 +1.2
1,087,948 - ABIE41_RS05255 0.53 -1.0
1,087,948 - ABIE41_RS05255 0.53 +0.1
1,087,948 - ABIE41_RS05255 0.53 +0.4
1,088,046 + ABIE41_RS05255 0.62 -0.4
1,088,046 + ABIE41_RS05255 0.62 -3.4
1,088,047 - ABIE41_RS05255 0.62 +0.3
1,088,047 - ABIE41_RS05255 0.62 -0.7
1,088,047 - ABIE41_RS05255 0.62 -1.0
1,088,047 - ABIE41_RS05255 0.62 -0.4
1,088,298 + ABIE41_RS05255 0.86 -0.6
1,088,298 + ABIE41_RS05255 0.86 -0.1
1,088,299 - ABIE41_RS05255 0.86 -0.6
1,088,299 - ABIE41_RS05255 0.86 +1.2
1,088,299 - ABIE41_RS05255 0.86 +0.3
1,088,594 - +0.6
1,088,641 + -1.4
1,088,642 - +1.6
1,088,806 + +0.2
1,088,807 - -0.3
1,088,807 - +0.2
1,088,995 + ABIE41_RS05260 0.17 -0.2
1,088,995 + ABIE41_RS05260 0.17 +1.5
1,088,995 + ABIE41_RS05260 0.17 -3.0
1,088,995 + ABIE41_RS05260 0.17 -3.2
1,088,995 + ABIE41_RS05260 0.17 +2.4
1,088,995 + ABIE41_RS05260 0.17 -0.8
1,088,995 + ABIE41_RS05260 0.17 +0.2
1,089,031 + ABIE41_RS05260 0.18 -1.7
1,089,031 + ABIE41_RS05260 0.18 -1.2
1,089,032 - ABIE41_RS05260 0.18 -1.5
1,089,032 - ABIE41_RS05260 0.18 +0.2
1,089,032 - ABIE41_RS05260 0.18 +0.1
1,089,032 - ABIE41_RS05260 0.18 +1.3
1,089,032 - ABIE41_RS05260 0.18 +2.8
1,089,032 - ABIE41_RS05260 0.18 -0.6
1,089,032 - ABIE41_RS05260 0.18 -1.6
1,089,047 - ABIE41_RS05260 0.19 -0.1
1,089,166 + ABIE41_RS05260 0.24 +2.0
1,089,166 + ABIE41_RS05260 0.24 +0.3
1,089,166 + ABIE41_RS05260 0.24 +0.6
1,089,166 + ABIE41_RS05260 0.24 +0.8
1,089,166 + ABIE41_RS05260 0.24 +1.1
1,089,224 - ABIE41_RS05260 0.27 -0.2
1,089,224 - ABIE41_RS05260 0.27 -2.3
1,089,224 - ABIE41_RS05260 0.27 -0.3
1,089,224 - ABIE41_RS05260 0.27 +0.0
1,089,274 + ABIE41_RS05260 0.29 +0.0
1,089,274 + ABIE41_RS05260 0.29 -0.2
1,089,274 + ABIE41_RS05260 0.29 +0.3
1,089,274 + ABIE41_RS05260 0.29 -1.9
1,089,274 + ABIE41_RS05260 0.29 -0.5
1,089,275 - ABIE41_RS05260 0.29 -2.5
1,089,275 - ABIE41_RS05260 0.29 +0.6
1,089,325 + ABIE41_RS05260 0.31 -0.2
1,089,325 + ABIE41_RS05260 0.31 -0.0
1,089,325 + ABIE41_RS05260 0.31 +0.5
1,089,325 + ABIE41_RS05260 0.31 -1.0
1,089,326 - ABIE41_RS05260 0.31 +0.3
1,089,326 - ABIE41_RS05260 0.31 -1.2
1,089,326 - ABIE41_RS05260 0.31 -2.8
1,089,326 - ABIE41_RS05260 0.31 -0.9
1,089,412 + ABIE41_RS05260 0.35 +0.0
1,089,412 + ABIE41_RS05260 0.35 -0.4
1,089,413 - ABIE41_RS05260 0.35 -1.1
1,089,539 - ABIE41_RS05260 0.40 -1.1
1,089,539 - ABIE41_RS05260 0.40 +0.5
1,089,539 - ABIE41_RS05260 0.40 +0.4
1,089,784 + ABIE41_RS05260 0.51 -2.2
1,089,785 - ABIE41_RS05260 0.51 +1.6
1,089,844 + ABIE41_RS05260 0.54 +0.3
1,089,845 - ABIE41_RS05260 0.54 -0.7
1,089,845 - ABIE41_RS05260 0.54 -0.4
1,089,880 + ABIE41_RS05260 0.55 -2.4
1,089,881 - ABIE41_RS05260 0.55 +0.7
1,090,021 + ABIE41_RS05260 0.61 -0.8
1,090,021 + ABIE41_RS05260 0.61 +0.4
1,090,022 - ABIE41_RS05260 0.61 -0.4
1,090,022 - ABIE41_RS05260 0.61 -2.7
1,090,022 - ABIE41_RS05260 0.61 +3.0
1,090,022 - ABIE41_RS05260 0.61 -3.0
1,090,022 - ABIE41_RS05260 0.61 +0.2
1,090,022 - ABIE41_RS05260 0.61 +0.6
1,090,061 - ABIE41_RS05260 0.63 -0.4
1,090,061 - ABIE41_RS05260 0.63 -1.2
1,090,112 - ABIE41_RS05260 0.65 -2.0
1,090,112 - ABIE41_RS05260 0.65 -1.3
1,090,112 - ABIE41_RS05260 0.65 +0.7
1,090,112 - ABIE41_RS05260 0.65 +0.6
1,090,300 + ABIE41_RS05260 0.74 -1.8
1,090,300 + ABIE41_RS05260 0.74 -0.5
1,090,360 + ABIE41_RS05260 0.76 +0.3
1,090,361 - ABIE41_RS05260 0.76 -0.2
1,090,366 + ABIE41_RS05260 0.76 +0.1
1,090,366 + ABIE41_RS05260 0.76 +0.7
1,090,367 - ABIE41_RS05260 0.76 +0.7
1,090,367 - ABIE41_RS05260 0.76 +1.4
1,090,367 - ABIE41_RS05260 0.76 +1.8
1,090,423 + ABIE41_RS05260 0.79 -0.0
1,090,424 - ABIE41_RS05260 0.79 +1.5
1,090,534 + ABIE41_RS05260 0.84 -0.5
1,090,535 - ABIE41_RS05260 0.84 +1.0
1,090,535 - ABIE41_RS05260 0.84 +1.8
1,090,561 + ABIE41_RS05260 0.85 -0.2
1,090,561 + ABIE41_RS05260 0.85 +0.1
1,090,562 - ABIE41_RS05260 0.85 +0.1
1,090,562 - ABIE41_RS05260 0.85 +0.9
1,090,744 + -2.2
1,091,054 - ABIE41_RS05265 0.14 -1.5
1,091,054 - ABIE41_RS05265 0.14 -1.0
1,091,107 + ABIE41_RS05265 0.20 +0.3
1,091,108 - ABIE41_RS05265 0.20 -0.2
1,091,108 - ABIE41_RS05265 0.20 -0.2
1,091,108 - ABIE41_RS05265 0.20 +0.7
1,091,108 - ABIE41_RS05265 0.20 -0.3
1,091,320 + ABIE41_RS05265 0.43 -0.4
1,091,320 + ABIE41_RS05265 0.43 -0.9
1,091,321 - ABIE41_RS05265 0.43 -0.0
1,091,470 - ABIE41_RS05265 0.60 +0.0
1,091,470 - ABIE41_RS05265 0.60 +1.2
1,091,638 + ABIE41_RS05265 0.79 -0.5
1,091,638 + ABIE41_RS05265 0.79 +0.3
1,091,639 - ABIE41_RS05265 0.79 -0.1
1,091,799 + -2.7
1,091,800 - -0.2
1,091,800 - -0.2
1,091,875 - -0.3
1,091,877 + +0.3
1,091,878 - +1.6

Or see this region's nucleotide sequence