Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29830 and ABIE40_RS29835 are separated by 785 nucleotides ABIE40_RS29835 and ABIE40_RS29840 are separated by 11 nucleotides ABIE40_RS29840 and ABIE40_RS29845 are separated by 92 nucleotides
ABIE40_RS29830: ABIE40_RS29830 - hypothetical protein, at 657,472 to 657,810
_RS29830
ABIE40_RS29835: ABIE40_RS29835 - transposase, at 658,596 to 658,937
_RS29835
ABIE40_RS29840: ABIE40_RS29840 - transposase, at 658,949 to 659,476
_RS29840
ABIE40_RS29845: ABIE40_RS29845 - transposase, at 659,569 to 661,088
_RS29845
Position (kb) 658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 657.609 kb on - strand, within ABIE40_RS29830 at 657.743 kb on + strand, within ABIE40_RS29830 at 657.743 kb on + strand, within ABIE40_RS29830 at 657.744 kb on - strand, within ABIE40_RS29830 at 657.863 kb on - strand at 657.906 kb on + strand at 657.906 kb on + strand at 657.907 kb on - strand at 657.907 kb on - strand at 657.909 kb on - strand at 657.940 kb on + strand at 657.941 kb on - strand at 657.941 kb on - strand at 657.945 kb on - strand at 658.047 kb on + strand at 658.047 kb on + strand at 658.087 kb on - strand at 658.228 kb on + strand at 658.337 kb on - strand at 658.399 kb on - strand at 658.399 kb on - strand at 658.425 kb on - strand at 658.604 kb on + strand at 658.604 kb on + strand at 658.604 kb on + strand at 658.604 kb on + strand at 658.605 kb on - strand at 658.605 kb on - strand at 658.773 kb on + strand, within ABIE40_RS29835 at 659.053 kb on - strand, within ABIE40_RS29840 at 659.069 kb on + strand, within ABIE40_RS29840 at 659.069 kb on + strand, within ABIE40_RS29840 at 659.069 kb on + strand, within ABIE40_RS29840 at 659.069 kb on + strand, within ABIE40_RS29840 at 659.069 kb on + strand, within ABIE40_RS29840 at 659.069 kb on + strand, within ABIE40_RS29840 at 659.070 kb on - strand, within ABIE40_RS29840 at 659.162 kb on + strand, within ABIE40_RS29840 at 659.162 kb on + strand, within ABIE40_RS29840 at 659.202 kb on + strand, within ABIE40_RS29840 at 659.203 kb on - strand, within ABIE40_RS29840 at 659.455 kb on + strand at 659.456 kb on - strand at 659.456 kb on - strand at 659.457 kb on + strand at 659.457 kb on + strand at 659.627 kb on - strand at 659.763 kb on + strand, within ABIE40_RS29845 at 659.763 kb on + strand, within ABIE40_RS29845 at 659.885 kb on + strand, within ABIE40_RS29845 at 659.906 kb on + strand, within ABIE40_RS29845 at 659.907 kb on - strand, within ABIE40_RS29845
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 657,609 - ABIE40_RS29830 0.40 -0.2 657,743 + ABIE40_RS29830 0.80 +1.3 657,743 + ABIE40_RS29830 0.80 +0.6 657,744 - ABIE40_RS29830 0.80 -2.5 657,863 - +2.0 657,906 + -1.2 657,906 + -0.1 657,907 - -1.4 657,907 - +0.5 657,909 - +0.5 657,940 + -1.1 657,941 - -1.3 657,941 - -3.2 657,945 - -0.4 658,047 + +1.3 658,047 + -1.6 658,087 - -2.4 658,228 + +2.7 658,337 - +0.1 658,399 - -0.0 658,399 - -2.9 658,425 - +0.2 658,604 + +0.5 658,604 + -0.4 658,604 + -1.9 658,604 + -0.4 658,605 - +0.9 658,605 - -2.8 658,773 + ABIE40_RS29835 0.52 -1.9 659,053 - ABIE40_RS29840 0.20 -0.3 659,069 + ABIE40_RS29840 0.23 +0.1 659,069 + ABIE40_RS29840 0.23 -0.1 659,069 + ABIE40_RS29840 0.23 -1.3 659,069 + ABIE40_RS29840 0.23 +0.8 659,069 + ABIE40_RS29840 0.23 +0.3 659,069 + ABIE40_RS29840 0.23 +0.6 659,070 - ABIE40_RS29840 0.23 -1.3 659,162 + ABIE40_RS29840 0.40 +0.8 659,162 + ABIE40_RS29840 0.40 -1.6 659,202 + ABIE40_RS29840 0.48 -2.2 659,203 - ABIE40_RS29840 0.48 +1.5 659,455 + -2.1 659,456 - +0.2 659,456 - -1.7 659,457 + -0.4 659,457 + +0.4 659,627 - -0.8 659,763 + ABIE40_RS29845 0.13 -2.1 659,763 + ABIE40_RS29845 0.13 -1.6 659,885 + ABIE40_RS29845 0.21 -1.4 659,906 + ABIE40_RS29845 0.22 -1.5 659,907 - ABIE40_RS29845 0.22 -0.9
Or see this region's nucleotide sequence