Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27825

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27820 and ABIE40_RS27825 are separated by 420 nucleotidesABIE40_RS27825 and ABIE40_RS27830 are separated by 556 nucleotides ABIE40_RS27820: ABIE40_RS27820 - LLM class flavin-dependent oxidoreductase, at 276,269 to 277,588 _RS27820 ABIE40_RS27825: ABIE40_RS27825 - ATP-binding protein, at 278,009 to 279,193 _RS27825 ABIE40_RS27830: ABIE40_RS27830 - DNA polymerase IV, at 279,750 to 280,835 _RS27830 Position (kb) 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 277.084 kb on + strand, within ABIE40_RS27820at 277.111 kb on - strand, within ABIE40_RS27820at 277.111 kb on - strand, within ABIE40_RS27820at 277.266 kb on + strand, within ABIE40_RS27820at 277.477 kb on + strandat 277.620 kb on + strandat 277.620 kb on + strandat 277.621 kb on - strandat 277.668 kb on + strandat 277.668 kb on + strandat 277.668 kb on + strandat 277.669 kb on - strandat 277.692 kb on - strandat 277.699 kb on + strandat 277.700 kb on - strandat 277.701 kb on + strandat 277.766 kb on + strandat 277.766 kb on + strandat 277.767 kb on - strandat 277.783 kb on + strandat 277.808 kb on + strandat 277.809 kb on + strandat 277.809 kb on + strandat 277.809 kb on + strandat 277.809 kb on + strandat 277.810 kb on - strandat 277.810 kb on - strandat 277.810 kb on - strandat 277.810 kb on - strandat 277.810 kb on - strandat 277.810 kb on - strandat 277.878 kb on + strandat 277.879 kb on - strandat 277.885 kb on + strandat 277.885 kb on + strandat 278.051 kb on - strandat 278.064 kb on - strandat 278.064 kb on - strandat 278.064 kb on - strandat 278.083 kb on - strandat 278.221 kb on + strand, within ABIE40_RS27825at 278.251 kb on - strand, within ABIE40_RS27825at 278.357 kb on - strand, within ABIE40_RS27825at 278.357 kb on - strand, within ABIE40_RS27825at 278.357 kb on - strand, within ABIE40_RS27825at 278.501 kb on - strand, within ABIE40_RS27825at 278.503 kb on - strand, within ABIE40_RS27825at 278.519 kb on - strand, within ABIE40_RS27825at 278.666 kb on - strand, within ABIE40_RS27825at 278.666 kb on - strand, within ABIE40_RS27825at 278.666 kb on - strand, within ABIE40_RS27825at 278.667 kb on + strand, within ABIE40_RS27825at 278.667 kb on + strand, within ABIE40_RS27825at 278.667 kb on + strand, within ABIE40_RS27825at 278.668 kb on - strand, within ABIE40_RS27825at 278.668 kb on - strand, within ABIE40_RS27825at 278.668 kb on - strand, within ABIE40_RS27825at 278.668 kb on - strand, within ABIE40_RS27825at 278.668 kb on - strand, within ABIE40_RS27825at 278.668 kb on - strand, within ABIE40_RS27825at 278.768 kb on - strand, within ABIE40_RS27825at 279.029 kb on - strand, within ABIE40_RS27825at 279.031 kb on + strand, within ABIE40_RS27825at 279.044 kb on - strand, within ABIE40_RS27825at 279.102 kb on + strandat 279.132 kb on - strandat 279.132 kb on - strandat 279.184 kb on + strandat 279.198 kb on - strandat 279.286 kb on - strandat 279.290 kb on - strandat 279.363 kb on + strandat 279.364 kb on - strandat 279.367 kb on + strandat 279.420 kb on + strandat 279.645 kb on + strandat 279.649 kb on + strandat 279.649 kb on + strandat 279.650 kb on - strandat 279.650 kb on - strandat 279.675 kb on + strandat 279.686 kb on - strandat 279.706 kb on - strandat 279.706 kb on - strandat 279.777 kb on - strandat 279.777 kb on - strandat 279.902 kb on + strand, within ABIE40_RS27830at 279.902 kb on + strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 279.907 kb on - strand, within ABIE40_RS27830at 280.005 kb on + strand, within ABIE40_RS27830at 280.006 kb on - strand, within ABIE40_RS27830at 280.047 kb on + strand, within ABIE40_RS27830at 280.048 kb on - strand, within ABIE40_RS27830at 280.086 kb on + strand, within ABIE40_RS27830at 280.087 kb on - strand, within ABIE40_RS27830at 280.113 kb on + strand, within ABIE40_RS27830at 280.115 kb on + strand, within ABIE40_RS27830at 280.116 kb on - strand, within ABIE40_RS27830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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277,084 + ABIE40_RS27820 0.62 -0.5
277,111 - ABIE40_RS27820 0.64 -1.4
277,111 - ABIE40_RS27820 0.64 -0.4
277,266 + ABIE40_RS27820 0.76 +1.2
277,477 + -0.2
277,620 + +0.4
277,620 + +0.8
277,621 - +1.1
277,668 + -0.2
277,668 + -3.5
277,668 + +0.4
277,669 - -3.6
277,692 - -0.2
277,699 + -0.1
277,700 - +0.4
277,701 + -0.4
277,766 + -0.4
277,766 + +0.1
277,767 - -1.4
277,783 + -0.5
277,808 + -0.4
277,809 + -0.6
277,809 + -0.3
277,809 + -1.9
277,809 + -1.4
277,810 - +0.3
277,810 - +0.2
277,810 - +2.7
277,810 - -0.5
277,810 - -1.2
277,810 - -0.1
277,878 + -1.0
277,879 - -2.6
277,885 + +0.2
277,885 + +0.0
278,051 - +0.3
278,064 - -0.4
278,064 - -1.3
278,064 - -1.3
278,083 - +0.4
278,221 + ABIE40_RS27825 0.18 -0.7
278,251 - ABIE40_RS27825 0.20 +0.2
278,357 - ABIE40_RS27825 0.29 +0.0
278,357 - ABIE40_RS27825 0.29 -1.0
278,357 - ABIE40_RS27825 0.29 -0.1
278,501 - ABIE40_RS27825 0.42 -0.8
278,503 - ABIE40_RS27825 0.42 -0.1
278,519 - ABIE40_RS27825 0.43 -2.5
278,666 - ABIE40_RS27825 0.55 -1.5
278,666 - ABIE40_RS27825 0.55 -0.4
278,666 - ABIE40_RS27825 0.55 +0.3
278,667 + ABIE40_RS27825 0.56 -2.6
278,667 + ABIE40_RS27825 0.56 +0.4
278,667 + ABIE40_RS27825 0.56 -0.8
278,668 - ABIE40_RS27825 0.56 -0.2
278,668 - ABIE40_RS27825 0.56 -1.1
278,668 - ABIE40_RS27825 0.56 +1.2
278,668 - ABIE40_RS27825 0.56 -1.0
278,668 - ABIE40_RS27825 0.56 -1.6
278,668 - ABIE40_RS27825 0.56 +1.4
278,768 - ABIE40_RS27825 0.64 -2.4
279,029 - ABIE40_RS27825 0.86 +0.6
279,031 + ABIE40_RS27825 0.86 -1.5
279,044 - ABIE40_RS27825 0.87 -0.6
279,102 + +0.3
279,132 - -0.6
279,132 - -0.2
279,184 + +0.3
279,198 - -1.0
279,286 - -1.3
279,290 - +1.1
279,363 + +1.3
279,364 - -1.1
279,367 + -0.0
279,420 + -0.8
279,645 + +0.1
279,649 + -1.2
279,649 + +0.2
279,650 - +0.5
279,650 - -0.3
279,675 + +0.6
279,686 - -1.6
279,706 - -1.1
279,706 - +0.9
279,777 - +0.8
279,777 - -0.2
279,902 + ABIE40_RS27830 0.14 -1.4
279,902 + ABIE40_RS27830 0.14 +0.4
279,907 - ABIE40_RS27830 0.14 +0.4
279,907 - ABIE40_RS27830 0.14 +1.2
279,907 - ABIE40_RS27830 0.14 +1.3
279,907 - ABIE40_RS27830 0.14 +0.8
279,907 - ABIE40_RS27830 0.14 -0.5
279,907 - ABIE40_RS27830 0.14 -2.0
279,907 - ABIE40_RS27830 0.14 +0.5
280,005 + ABIE40_RS27830 0.23 -0.1
280,006 - ABIE40_RS27830 0.24 -0.1
280,047 + ABIE40_RS27830 0.27 -0.7
280,048 - ABIE40_RS27830 0.27 +1.2
280,086 + ABIE40_RS27830 0.31 +0.7
280,087 - ABIE40_RS27830 0.31 +0.4
280,113 + ABIE40_RS27830 0.33 -0.5
280,115 + ABIE40_RS27830 0.34 +0.3
280,116 - ABIE40_RS27830 0.34 +0.0

Or see this region's nucleotide sequence