Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22040 and ABIE40_RS22045 are separated by 19 nucleotides ABIE40_RS22045 and ABIE40_RS22050 overlap by 4 nucleotides
ABIE40_RS22040: ABIE40_RS22040 - TolC family outer membrane protein, at 543,169 to 544,530
_RS22040
ABIE40_RS22045: ABIE40_RS22045 - type I secretion system permease/ATPase, at 544,550 to 546,745
_RS22045
ABIE40_RS22050: ABIE40_RS22050 - HlyD family type I secretion periplasmic adaptor subunit, at 546,742 to 548,034
_RS22050
Position (kb) 544
545
546
547 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 543.853 kb on + strand, within ABIE40_RS22040 at 543.853 kb on + strand, within ABIE40_RS22040 at 543.854 kb on - strand, within ABIE40_RS22040 at 543.854 kb on - strand, within ABIE40_RS22040 at 543.913 kb on + strand, within ABIE40_RS22040 at 543.913 kb on + strand, within ABIE40_RS22040 at 543.913 kb on + strand, within ABIE40_RS22040 at 543.991 kb on + strand, within ABIE40_RS22040 at 544.024 kb on + strand, within ABIE40_RS22040 at 544.025 kb on - strand, within ABIE40_RS22040 at 544.025 kb on - strand, within ABIE40_RS22040 at 544.025 kb on - strand, within ABIE40_RS22040 at 544.182 kb on + strand, within ABIE40_RS22040 at 544.183 kb on - strand, within ABIE40_RS22040 at 544.219 kb on + strand, within ABIE40_RS22040 at 544.339 kb on + strand, within ABIE40_RS22040 at 544.339 kb on + strand, within ABIE40_RS22040 at 544.339 kb on + strand, within ABIE40_RS22040 at 544.339 kb on + strand, within ABIE40_RS22040 at 544.339 kb on + strand, within ABIE40_RS22040 at 544.340 kb on - strand, within ABIE40_RS22040 at 544.340 kb on - strand, within ABIE40_RS22040 at 544.340 kb on - strand, within ABIE40_RS22040 at 544.411 kb on + strand at 544.412 kb on - strand at 544.459 kb on + strand at 544.508 kb on + strand at 544.509 kb on - strand at 544.528 kb on + strand at 544.528 kb on + strand at 544.528 kb on + strand at 544.529 kb on - strand at 544.560 kb on + strand at 544.560 kb on + strand at 544.616 kb on + strand at 544.631 kb on + strand at 544.631 kb on + strand at 544.631 kb on + strand at 544.631 kb on + strand at 544.631 kb on + strand at 544.631 kb on + strand at 544.631 kb on + strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.632 kb on - strand at 544.856 kb on + strand, within ABIE40_RS22045 at 544.856 kb on + strand, within ABIE40_RS22045 at 544.857 kb on - strand, within ABIE40_RS22045 at 544.857 kb on - strand, within ABIE40_RS22045 at 544.857 kb on - strand, within ABIE40_RS22045 at 544.857 kb on - strand, within ABIE40_RS22045 at 544.933 kb on + strand, within ABIE40_RS22045 at 544.955 kb on + strand, within ABIE40_RS22045 at 544.955 kb on + strand, within ABIE40_RS22045 at 544.955 kb on + strand, within ABIE40_RS22045 at 544.956 kb on - strand, within ABIE40_RS22045 at 544.958 kb on + strand, within ABIE40_RS22045 at 544.959 kb on - strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.054 kb on + strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.055 kb on - strand, within ABIE40_RS22045 at 545.129 kb on + strand, within ABIE40_RS22045 at 545.130 kb on - strand, within ABIE40_RS22045 at 545.130 kb on - strand, within ABIE40_RS22045 at 545.199 kb on - strand, within ABIE40_RS22045 at 545.247 kb on - strand, within ABIE40_RS22045 at 545.247 kb on - strand, within ABIE40_RS22045 at 545.342 kb on + strand, within ABIE40_RS22045 at 545.342 kb on + strand, within ABIE40_RS22045 at 545.343 kb on - strand, within ABIE40_RS22045 at 545.363 kb on + strand, within ABIE40_RS22045 at 545.363 kb on + strand, within ABIE40_RS22045 at 545.364 kb on - strand, within ABIE40_RS22045 at 545.364 kb on - strand, within ABIE40_RS22045 at 545.364 kb on - strand, within ABIE40_RS22045 at 545.364 kb on - strand, within ABIE40_RS22045 at 545.364 kb on - strand, within ABIE40_RS22045 at 545.364 kb on - strand, within ABIE40_RS22045 at 545.450 kb on + strand, within ABIE40_RS22045 at 545.450 kb on + strand, within ABIE40_RS22045 at 545.450 kb on + strand, within ABIE40_RS22045 at 545.450 kb on + strand, within ABIE40_RS22045 at 545.451 kb on - strand, within ABIE40_RS22045 at 545.451 kb on - strand, within ABIE40_RS22045 at 545.451 kb on - strand, within ABIE40_RS22045 at 545.675 kb on + strand, within ABIE40_RS22045 at 545.675 kb on + strand, within ABIE40_RS22045 at 545.707 kb on + strand, within ABIE40_RS22045 at 545.707 kb on + strand, within ABIE40_RS22045 at 545.708 kb on - strand, within ABIE40_RS22045 at 545.708 kb on - strand, within ABIE40_RS22045 at 545.708 kb on - strand, within ABIE40_RS22045 at 545.708 kb on - strand, within ABIE40_RS22045 at 545.708 kb on - strand, within ABIE40_RS22045 at 545.708 kb on - strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.783 kb on + strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 545.784 kb on - strand, within ABIE40_RS22045 at 546.027 kb on - strand, within ABIE40_RS22045 at 546.098 kb on - strand, within ABIE40_RS22045 at 546.204 kb on - strand, within ABIE40_RS22045 at 546.997 kb on - strand, within ABIE40_RS22050 at 547.090 kb on + strand, within ABIE40_RS22050 at 547.186 kb on + strand, within ABIE40_RS22050 at 547.186 kb on + strand, within ABIE40_RS22050 at 547.187 kb on - strand, within ABIE40_RS22050 at 547.303 kb on + strand, within ABIE40_RS22050 at 547.303 kb on + strand, within ABIE40_RS22050 at 547.377 kb on + strand, within ABIE40_RS22050 at 547.406 kb on - strand, within ABIE40_RS22050 at 547.406 kb on - strand, within ABIE40_RS22050 at 547.406 kb on - strand, within ABIE40_RS22050 at 547.611 kb on + strand, within ABIE40_RS22050 at 547.612 kb on - strand, within ABIE40_RS22050 at 547.639 kb on + strand, within ABIE40_RS22050 at 547.639 kb on + strand, within ABIE40_RS22050 at 547.639 kb on + strand, within ABIE40_RS22050 at 547.687 kb on - strand, within ABIE40_RS22050
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 543,853 + ABIE40_RS22040 0.50 -0.6 543,853 + ABIE40_RS22040 0.50 +1.2 543,854 - ABIE40_RS22040 0.50 -3.0 543,854 - ABIE40_RS22040 0.50 -0.8 543,913 + ABIE40_RS22040 0.55 -0.5 543,913 + ABIE40_RS22040 0.55 -1.8 543,913 + ABIE40_RS22040 0.55 -0.3 543,991 + ABIE40_RS22040 0.60 +0.1 544,024 + ABIE40_RS22040 0.63 -1.5 544,025 - ABIE40_RS22040 0.63 -0.9 544,025 - ABIE40_RS22040 0.63 +0.5 544,025 - ABIE40_RS22040 0.63 -1.0 544,182 + ABIE40_RS22040 0.74 -0.3 544,183 - ABIE40_RS22040 0.74 +1.6 544,219 + ABIE40_RS22040 0.77 -1.3 544,339 + ABIE40_RS22040 0.86 +1.0 544,339 + ABIE40_RS22040 0.86 +0.4 544,339 + ABIE40_RS22040 0.86 -1.4 544,339 + ABIE40_RS22040 0.86 +0.5 544,339 + ABIE40_RS22040 0.86 +0.6 544,340 - ABIE40_RS22040 0.86 -0.8 544,340 - ABIE40_RS22040 0.86 -0.1 544,340 - ABIE40_RS22040 0.86 -0.5 544,411 + -0.9 544,412 - +0.2 544,459 + -1.0 544,508 + -0.6 544,509 - -0.0 544,528 + -0.4 544,528 + +1.2 544,528 + +0.7 544,529 - -1.2 544,560 + +1.1 544,560 + +0.2 544,616 + -0.7 544,631 + +4.8 544,631 + +0.1 544,631 + -1.1 544,631 + +0.2 544,631 + +0.1 544,631 + -0.1 544,631 + -0.3 544,632 - -0.5 544,632 - +2.8 544,632 - +0.7 544,632 - +0.2 544,632 - -0.2 544,632 - +0.0 544,632 - -1.0 544,632 - +2.2 544,632 - -0.4 544,856 + ABIE40_RS22045 0.14 +0.1 544,856 + ABIE40_RS22045 0.14 -2.4 544,857 - ABIE40_RS22045 0.14 +0.0 544,857 - ABIE40_RS22045 0.14 +1.0 544,857 - ABIE40_RS22045 0.14 -0.1 544,857 - ABIE40_RS22045 0.14 -0.9 544,933 + ABIE40_RS22045 0.17 +1.6 544,955 + ABIE40_RS22045 0.18 +0.7 544,955 + ABIE40_RS22045 0.18 +0.9 544,955 + ABIE40_RS22045 0.18 +1.4 544,956 - ABIE40_RS22045 0.18 -2.7 544,958 + ABIE40_RS22045 0.19 -1.7 544,959 - ABIE40_RS22045 0.19 -0.1 545,054 + ABIE40_RS22045 0.23 +0.0 545,054 + ABIE40_RS22045 0.23 -0.1 545,054 + ABIE40_RS22045 0.23 -1.2 545,054 + ABIE40_RS22045 0.23 -1.8 545,054 + ABIE40_RS22045 0.23 -0.1 545,054 + ABIE40_RS22045 0.23 -1.7 545,054 + ABIE40_RS22045 0.23 -0.3 545,054 + ABIE40_RS22045 0.23 -1.3 545,055 - ABIE40_RS22045 0.23 +0.1 545,055 - ABIE40_RS22045 0.23 -1.0 545,055 - ABIE40_RS22045 0.23 -0.2 545,055 - ABIE40_RS22045 0.23 -0.0 545,055 - ABIE40_RS22045 0.23 -1.2 545,055 - ABIE40_RS22045 0.23 +0.8 545,055 - ABIE40_RS22045 0.23 -0.7 545,129 + ABIE40_RS22045 0.26 -0.6 545,130 - ABIE40_RS22045 0.26 -1.0 545,130 - ABIE40_RS22045 0.26 -0.9 545,199 - ABIE40_RS22045 0.30 -0.0 545,247 - ABIE40_RS22045 0.32 -1.1 545,247 - ABIE40_RS22045 0.32 +0.8 545,342 + ABIE40_RS22045 0.36 -0.7 545,342 + ABIE40_RS22045 0.36 +1.3 545,343 - ABIE40_RS22045 0.36 -0.5 545,363 + ABIE40_RS22045 0.37 +0.0 545,363 + ABIE40_RS22045 0.37 -0.8 545,364 - ABIE40_RS22045 0.37 +0.1 545,364 - ABIE40_RS22045 0.37 -1.0 545,364 - ABIE40_RS22045 0.37 -0.3 545,364 - ABIE40_RS22045 0.37 +0.2 545,364 - ABIE40_RS22045 0.37 +1.1 545,364 - ABIE40_RS22045 0.37 +0.6 545,450 + ABIE40_RS22045 0.41 -0.6 545,450 + ABIE40_RS22045 0.41 -1.9 545,450 + ABIE40_RS22045 0.41 +1.7 545,450 + ABIE40_RS22045 0.41 -0.1 545,451 - ABIE40_RS22045 0.41 -0.1 545,451 - ABIE40_RS22045 0.41 -0.5 545,451 - ABIE40_RS22045 0.41 -2.0 545,675 + ABIE40_RS22045 0.51 -0.3 545,675 + ABIE40_RS22045 0.51 +0.8 545,707 + ABIE40_RS22045 0.53 -4.8 545,707 + ABIE40_RS22045 0.53 -0.6 545,708 - ABIE40_RS22045 0.53 +0.2 545,708 - ABIE40_RS22045 0.53 +0.2 545,708 - ABIE40_RS22045 0.53 -1.8 545,708 - ABIE40_RS22045 0.53 +1.3 545,708 - ABIE40_RS22045 0.53 -0.4 545,708 - ABIE40_RS22045 0.53 +0.1 545,783 + ABIE40_RS22045 0.56 -0.0 545,783 + ABIE40_RS22045 0.56 +0.3 545,783 + ABIE40_RS22045 0.56 -1.1 545,783 + ABIE40_RS22045 0.56 +2.2 545,783 + ABIE40_RS22045 0.56 +0.2 545,784 - ABIE40_RS22045 0.56 +0.5 545,784 - ABIE40_RS22045 0.56 -0.6 545,784 - ABIE40_RS22045 0.56 +0.8 545,784 - ABIE40_RS22045 0.56 -0.2 545,784 - ABIE40_RS22045 0.56 -0.0 546,027 - ABIE40_RS22045 0.67 +0.3 546,098 - ABIE40_RS22045 0.70 -1.5 546,204 - ABIE40_RS22045 0.75 +0.2 546,997 - ABIE40_RS22050 0.20 +1.2 547,090 + ABIE40_RS22050 0.27 -0.4 547,186 + ABIE40_RS22050 0.34 +0.9 547,186 + ABIE40_RS22050 0.34 -1.6 547,187 - ABIE40_RS22050 0.34 +0.7 547,303 + ABIE40_RS22050 0.43 -0.1 547,303 + ABIE40_RS22050 0.43 -0.0 547,377 + ABIE40_RS22050 0.49 -0.1 547,406 - ABIE40_RS22050 0.51 +1.2 547,406 - ABIE40_RS22050 0.51 -3.3 547,406 - ABIE40_RS22050 0.51 -0.8 547,611 + ABIE40_RS22050 0.67 -0.8 547,612 - ABIE40_RS22050 0.67 -0.7 547,639 + ABIE40_RS22050 0.69 -3.1 547,639 + ABIE40_RS22050 0.69 +0.6 547,639 + ABIE40_RS22050 0.69 -1.3 547,687 - ABIE40_RS22050 0.73 -1.9
Or see this region's nucleotide sequence