Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20800 and ABIE40_RS20805 are separated by 258 nucleotides ABIE40_RS20805 and ABIE40_RS20810 are separated by 4 nucleotides
ABIE40_RS20800: ABIE40_RS20800 - indolepyruvate ferredoxin oxidoreductase family protein, at 268,892 to 272,362
_RS20800
ABIE40_RS20805: ABIE40_RS20805 - Xaa-Pro aminopeptidase, at 272,621 to 273,985
_RS20805
ABIE40_RS20810: ABIE40_RS20810 - autotransporter domain-containing protein, at 273,990 to 276,962
_RS20810
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.694 kb on + strand, within ABIE40_RS20800 at 271.694 kb on + strand, within ABIE40_RS20800 at 271.695 kb on - strand, within ABIE40_RS20800 at 271.788 kb on + strand, within ABIE40_RS20800 at 271.818 kb on + strand, within ABIE40_RS20800 at 271.819 kb on - strand, within ABIE40_RS20800 at 271.848 kb on + strand, within ABIE40_RS20800 at 271.849 kb on - strand, within ABIE40_RS20800 at 272.184 kb on + strand at 272.326 kb on + strand at 272.327 kb on - strand at 272.328 kb on + strand at 272.328 kb on + strand at 272.328 kb on + strand at 272.328 kb on + strand at 272.328 kb on + strand at 272.329 kb on - strand at 272.329 kb on - strand at 272.332 kb on + strand at 272.332 kb on + strand at 272.333 kb on - strand at 272.445 kb on + strand at 272.446 kb on - strand at 272.448 kb on + strand at 272.448 kb on + strand at 272.448 kb on + strand at 272.448 kb on + strand at 272.449 kb on - strand at 272.449 kb on - strand at 272.449 kb on - strand at 272.449 kb on - strand at 272.449 kb on - strand at 272.449 kb on - strand at 272.449 kb on - strand at 272.629 kb on + strand at 272.630 kb on - strand at 272.630 kb on - strand at 272.699 kb on + strand at 272.699 kb on + strand at 272.699 kb on + strand at 272.699 kb on + strand at 272.699 kb on + strand at 272.699 kb on + strand at 272.700 kb on - strand at 272.700 kb on - strand at 272.700 kb on - strand at 272.700 kb on - strand at 272.700 kb on - strand at 272.700 kb on - strand at 272.700 kb on - strand at 272.756 kb on + strand at 272.757 kb on - strand at 272.757 kb on - strand at 272.757 kb on - strand at 272.885 kb on + strand, within ABIE40_RS20805 at 272.885 kb on + strand, within ABIE40_RS20805 at 272.885 kb on + strand, within ABIE40_RS20805 at 272.885 kb on + strand, within ABIE40_RS20805 at 272.886 kb on - strand, within ABIE40_RS20805 at 272.886 kb on - strand, within ABIE40_RS20805 at 272.886 kb on - strand, within ABIE40_RS20805 at 272.886 kb on - strand, within ABIE40_RS20805 at 272.886 kb on - strand, within ABIE40_RS20805 at 272.886 kb on - strand, within ABIE40_RS20805 at 272.887 kb on + strand, within ABIE40_RS20805 at 273.041 kb on + strand, within ABIE40_RS20805 at 273.041 kb on + strand, within ABIE40_RS20805 at 273.041 kb on + strand, within ABIE40_RS20805 at 273.041 kb on + strand, within ABIE40_RS20805 at 273.042 kb on - strand, within ABIE40_RS20805 at 273.045 kb on + strand, within ABIE40_RS20805 at 273.045 kb on + strand, within ABIE40_RS20805 at 273.045 kb on + strand, within ABIE40_RS20805 at 273.045 kb on + strand, within ABIE40_RS20805 at 273.045 kb on + strand, within ABIE40_RS20805 at 273.045 kb on + strand, within ABIE40_RS20805 at 273.046 kb on - strand, within ABIE40_RS20805 at 273.046 kb on - strand, within ABIE40_RS20805 at 273.046 kb on - strand, within ABIE40_RS20805 at 273.046 kb on - strand, within ABIE40_RS20805 at 273.046 kb on - strand, within ABIE40_RS20805 at 273.376 kb on + strand, within ABIE40_RS20805 at 273.376 kb on + strand, within ABIE40_RS20805 at 273.376 kb on + strand, within ABIE40_RS20805 at 273.377 kb on - strand, within ABIE40_RS20805 at 273.377 kb on - strand, within ABIE40_RS20805 at 273.377 kb on - strand, within ABIE40_RS20805 at 273.521 kb on + strand, within ABIE40_RS20805 at 273.522 kb on - strand, within ABIE40_RS20805 at 273.522 kb on - strand, within ABIE40_RS20805 at 273.545 kb on + strand, within ABIE40_RS20805 at 273.546 kb on - strand, within ABIE40_RS20805 at 273.568 kb on - strand, within ABIE40_RS20805 at 273.935 kb on + strand at 273.935 kb on + strand at 273.936 kb on - strand at 273.936 kb on - strand at 273.936 kb on - strand at 273.936 kb on - strand at 273.936 kb on - strand at 273.983 kb on + strand at 273.991 kb on + strand at 273.992 kb on - strand at 273.992 kb on - strand at 274.057 kb on + strand at 274.057 kb on + strand at 274.057 kb on + strand at 274.058 kb on - strand at 274.058 kb on - strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.061 kb on + strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.062 kb on - strand at 274.208 kb on + strand at 274.209 kb on - strand at 274.209 kb on - strand at 274.209 kb on - strand at 274.378 kb on + strand, within ABIE40_RS20810 at 274.378 kb on + strand, within ABIE40_RS20810 at 274.378 kb on + strand, within ABIE40_RS20810 at 274.378 kb on + strand, within ABIE40_RS20810 at 274.378 kb on + strand, within ABIE40_RS20810 at 274.379 kb on - strand, within ABIE40_RS20810 at 274.379 kb on - strand, within ABIE40_RS20810 at 274.379 kb on - strand, within ABIE40_RS20810 at 274.468 kb on + strand, within ABIE40_RS20810 at 274.524 kb on + strand, within ABIE40_RS20810 at 274.524 kb on + strand, within ABIE40_RS20810 at 274.524 kb on + strand, within ABIE40_RS20810 at 274.524 kb on + strand, within ABIE40_RS20810 at 274.525 kb on - strand, within ABIE40_RS20810 at 274.525 kb on - strand, within ABIE40_RS20810 at 274.526 kb on + strand, within ABIE40_RS20810 at 274.526 kb on + strand, within ABIE40_RS20810 at 274.526 kb on + strand, within ABIE40_RS20810 at 274.527 kb on - strand, within ABIE40_RS20810 at 274.527 kb on - strand, within ABIE40_RS20810 at 274.527 kb on - strand, within ABIE40_RS20810 at 274.527 kb on - strand, within ABIE40_RS20810 at 274.527 kb on - strand, within ABIE40_RS20810 at 274.588 kb on + strand, within ABIE40_RS20810 at 274.588 kb on + strand, within ABIE40_RS20810 at 274.589 kb on - strand, within ABIE40_RS20810 at 274.589 kb on - strand, within ABIE40_RS20810 at 274.603 kb on + strand, within ABIE40_RS20810 at 274.765 kb on + strand, within ABIE40_RS20810 at 274.766 kb on - strand, within ABIE40_RS20810 at 274.766 kb on - strand, within ABIE40_RS20810 at 274.766 kb on - strand, within ABIE40_RS20810 at 274.766 kb on - strand, within ABIE40_RS20810 at 274.910 kb on + strand, within ABIE40_RS20810 at 274.910 kb on + strand, within ABIE40_RS20810 at 274.910 kb on + strand, within ABIE40_RS20810 at 274.910 kb on + strand, within ABIE40_RS20810 at 274.911 kb on - strand, within ABIE40_RS20810 at 274.911 kb on - strand, within ABIE40_RS20810
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 271,694 + ABIE40_RS20800 0.81 -1.2 271,694 + ABIE40_RS20800 0.81 +0.4 271,695 - ABIE40_RS20800 0.81 -1.8 271,788 + ABIE40_RS20800 0.83 -0.7 271,818 + ABIE40_RS20800 0.84 -2.1 271,819 - ABIE40_RS20800 0.84 -0.7 271,848 + ABIE40_RS20800 0.85 +0.5 271,849 - ABIE40_RS20800 0.85 -1.1 272,184 + -0.1 272,326 + -0.7 272,327 - -0.5 272,328 + +2.3 272,328 + +0.4 272,328 + -0.6 272,328 + -0.5 272,328 + -3.5 272,329 - +0.9 272,329 - +0.5 272,332 + -0.2 272,332 + +0.1 272,333 - -1.3 272,445 + -0.9 272,446 - -0.1 272,448 + -0.2 272,448 + +0.3 272,448 + +2.7 272,448 + -1.1 272,449 - -0.3 272,449 - +0.5 272,449 - +0.3 272,449 - -1.1 272,449 - -0.3 272,449 - -1.7 272,449 - -0.7 272,629 + +0.9 272,630 - -0.8 272,630 - -1.0 272,699 + -0.8 272,699 + +0.8 272,699 + +0.4 272,699 + -0.3 272,699 + +0.5 272,699 + -0.2 272,700 - -2.7 272,700 - -0.3 272,700 - -0.3 272,700 - +0.3 272,700 - +0.7 272,700 - +1.5 272,700 - -0.2 272,756 + +0.0 272,757 - -1.7 272,757 - +0.3 272,757 - -0.8 272,885 + ABIE40_RS20805 0.19 -0.7 272,885 + ABIE40_RS20805 0.19 -0.8 272,885 + ABIE40_RS20805 0.19 -1.5 272,885 + ABIE40_RS20805 0.19 -1.0 272,886 - ABIE40_RS20805 0.19 -2.9 272,886 - ABIE40_RS20805 0.19 +1.5 272,886 - ABIE40_RS20805 0.19 -1.4 272,886 - ABIE40_RS20805 0.19 -1.0 272,886 - ABIE40_RS20805 0.19 +1.0 272,886 - ABIE40_RS20805 0.19 +1.1 272,887 + ABIE40_RS20805 0.19 -2.0 273,041 + ABIE40_RS20805 0.31 -2.7 273,041 + ABIE40_RS20805 0.31 +0.7 273,041 + ABIE40_RS20805 0.31 -0.5 273,041 + ABIE40_RS20805 0.31 +0.7 273,042 - ABIE40_RS20805 0.31 -0.0 273,045 + ABIE40_RS20805 0.31 +0.5 273,045 + ABIE40_RS20805 0.31 -0.9 273,045 + ABIE40_RS20805 0.31 -0.2 273,045 + ABIE40_RS20805 0.31 -1.3 273,045 + ABIE40_RS20805 0.31 +0.0 273,045 + ABIE40_RS20805 0.31 -0.2 273,046 - ABIE40_RS20805 0.31 -0.2 273,046 - ABIE40_RS20805 0.31 +0.5 273,046 - ABIE40_RS20805 0.31 -0.9 273,046 - ABIE40_RS20805 0.31 +0.3 273,046 - ABIE40_RS20805 0.31 +1.6 273,376 + ABIE40_RS20805 0.55 -0.4 273,376 + ABIE40_RS20805 0.55 +0.9 273,376 + ABIE40_RS20805 0.55 +0.7 273,377 - ABIE40_RS20805 0.55 -1.1 273,377 - ABIE40_RS20805 0.55 -1.4 273,377 - ABIE40_RS20805 0.55 -1.0 273,521 + ABIE40_RS20805 0.66 -1.0 273,522 - ABIE40_RS20805 0.66 +0.2 273,522 - ABIE40_RS20805 0.66 +0.2 273,545 + ABIE40_RS20805 0.68 -3.6 273,546 - ABIE40_RS20805 0.68 -0.8 273,568 - ABIE40_RS20805 0.69 +0.2 273,935 + +1.5 273,935 + +0.9 273,936 - +0.7 273,936 - +1.8 273,936 - -2.6 273,936 - -0.2 273,936 - +0.0 273,983 + -0.9 273,991 + -1.1 273,992 - -0.5 273,992 - +1.0 274,057 + -1.4 274,057 + +0.1 274,057 + +0.5 274,058 - -0.7 274,058 - -0.5 274,061 + -0.0 274,061 + +0.6 274,061 + +0.0 274,061 + -1.9 274,061 + -1.9 274,061 + -0.9 274,061 + -0.2 274,061 + -0.4 274,062 - -0.5 274,062 - -0.2 274,062 - +2.1 274,062 - +0.2 274,062 - -1.0 274,062 - -0.1 274,062 - +0.9 274,062 - -0.2 274,062 - +0.5 274,062 - +0.9 274,062 - -0.2 274,062 - -1.4 274,062 - +0.1 274,062 - +0.4 274,062 - -1.7 274,062 - +0.0 274,062 - -0.6 274,208 + -0.5 274,209 - -0.1 274,209 - -1.4 274,209 - -1.1 274,378 + ABIE40_RS20810 0.13 +1.3 274,378 + ABIE40_RS20810 0.13 -1.5 274,378 + ABIE40_RS20810 0.13 -0.6 274,378 + ABIE40_RS20810 0.13 +0.2 274,378 + ABIE40_RS20810 0.13 -0.8 274,379 - ABIE40_RS20810 0.13 +2.2 274,379 - ABIE40_RS20810 0.13 -0.4 274,379 - ABIE40_RS20810 0.13 -0.5 274,468 + ABIE40_RS20810 0.16 -2.1 274,524 + ABIE40_RS20810 0.18 -2.9 274,524 + ABIE40_RS20810 0.18 -1.1 274,524 + ABIE40_RS20810 0.18 +0.4 274,524 + ABIE40_RS20810 0.18 -1.6 274,525 - ABIE40_RS20810 0.18 +0.1 274,525 - ABIE40_RS20810 0.18 -0.1 274,526 + ABIE40_RS20810 0.18 -0.7 274,526 + ABIE40_RS20810 0.18 -2.0 274,526 + ABIE40_RS20810 0.18 -0.8 274,527 - ABIE40_RS20810 0.18 -0.7 274,527 - ABIE40_RS20810 0.18 -2.0 274,527 - ABIE40_RS20810 0.18 -0.7 274,527 - ABIE40_RS20810 0.18 +1.0 274,527 - ABIE40_RS20810 0.18 -0.0 274,588 + ABIE40_RS20810 0.20 +0.7 274,588 + ABIE40_RS20810 0.20 +0.6 274,589 - ABIE40_RS20810 0.20 +0.2 274,589 - ABIE40_RS20810 0.20 -0.7 274,603 + ABIE40_RS20810 0.21 +0.1 274,765 + ABIE40_RS20810 0.26 -0.8 274,766 - ABIE40_RS20810 0.26 +0.7 274,766 - ABIE40_RS20810 0.26 +2.6 274,766 - ABIE40_RS20810 0.26 +1.3 274,766 - ABIE40_RS20810 0.26 +1.6 274,910 + ABIE40_RS20810 0.31 +1.3 274,910 + ABIE40_RS20810 0.31 -0.3 274,910 + ABIE40_RS20810 0.31 -0.2 274,910 + ABIE40_RS20810 0.31 +0.6 274,911 - ABIE40_RS20810 0.31 +0.0 274,911 - ABIE40_RS20810 0.31 -0.4
Or see this region's nucleotide sequence