Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05020 and ABIE40_RS05025 are separated by 438 nucleotides ABIE40_RS05025 and ABIE40_RS05030 are separated by 64 nucleotides ABIE40_RS05030 and ABIE40_RS05035 are separated by 433 nucleotides
ABIE40_RS05020: ABIE40_RS05020 - monovalent cation/H(+) antiporter subunit G, at 981,216 to 981,548
_RS05020
ABIE40_RS05025: ABIE40_RS05025 - MucR family transcriptional regulator, at 981,987 to 982,418
_RS05025
ABIE40_RS05030: ABIE40_RS05030 - MFS transporter, at 982,483 to 983,682
_RS05030
ABIE40_RS05035: ABIE40_RS05035 - AraC family transcriptional regulator, at 984,116 to 985,012
_RS05035
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 981.523 kb on + strand at 981.524 kb on - strand at 981.524 kb on - strand at 981.555 kb on - strand at 981.608 kb on - strand at 981.608 kb on - strand at 981.780 kb on + strand at 981.780 kb on + strand at 981.879 kb on + strand at 981.914 kb on - strand at 981.951 kb on + strand at 981.952 kb on - strand at 982.048 kb on + strand, within ABIE40_RS05025 at 982.057 kb on - strand, within ABIE40_RS05025 at 982.072 kb on + strand, within ABIE40_RS05025 at 982.072 kb on + strand, within ABIE40_RS05025 at 982.072 kb on + strand, within ABIE40_RS05025 at 982.072 kb on + strand, within ABIE40_RS05025 at 982.072 kb on + strand, within ABIE40_RS05025 at 982.073 kb on + strand, within ABIE40_RS05025 at 982.125 kb on - strand, within ABIE40_RS05025 at 982.326 kb on + strand, within ABIE40_RS05025 at 982.347 kb on + strand, within ABIE40_RS05025 at 982.419 kb on + strand at 982.419 kb on + strand at 982.481 kb on + strand at 982.481 kb on + strand at 982.481 kb on + strand at 982.484 kb on + strand at 982.484 kb on + strand at 982.484 kb on + strand at 982.484 kb on + strand at 982.484 kb on + strand at 982.484 kb on + strand at 982.485 kb on - strand at 982.485 kb on - strand at 982.485 kb on - strand at 982.485 kb on - strand at 982.485 kb on - strand at 982.592 kb on + strand at 982.592 kb on + strand at 982.592 kb on + strand at 982.592 kb on + strand at 982.593 kb on - strand at 982.593 kb on - strand at 982.593 kb on - strand at 982.752 kb on - strand, within ABIE40_RS05030 at 982.997 kb on + strand, within ABIE40_RS05030 at 982.997 kb on + strand, within ABIE40_RS05030 at 982.997 kb on + strand, within ABIE40_RS05030 at 982.998 kb on - strand, within ABIE40_RS05030 at 982.998 kb on - strand, within ABIE40_RS05030 at 982.998 kb on - strand, within ABIE40_RS05030 at 982.998 kb on - strand, within ABIE40_RS05030 at 982.998 kb on - strand, within ABIE40_RS05030 at 982.998 kb on - strand, within ABIE40_RS05030 at 983.004 kb on + strand, within ABIE40_RS05030 at 983.004 kb on + strand, within ABIE40_RS05030 at 983.004 kb on + strand, within ABIE40_RS05030 at 983.004 kb on + strand, within ABIE40_RS05030 at 983.005 kb on - strand, within ABIE40_RS05030 at 983.005 kb on - strand, within ABIE40_RS05030 at 983.005 kb on - strand, within ABIE40_RS05030 at 983.005 kb on - strand, within ABIE40_RS05030 at 983.054 kb on + strand, within ABIE40_RS05030 at 983.054 kb on + strand, within ABIE40_RS05030 at 983.055 kb on - strand, within ABIE40_RS05030 at 983.055 kb on - strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.132 kb on + strand, within ABIE40_RS05030 at 983.133 kb on - strand, within ABIE40_RS05030 at 983.133 kb on - strand, within ABIE40_RS05030 at 983.133 kb on - strand, within ABIE40_RS05030 at 983.133 kb on - strand, within ABIE40_RS05030 at 983.168 kb on + strand, within ABIE40_RS05030 at 983.168 kb on + strand, within ABIE40_RS05030 at 983.168 kb on + strand, within ABIE40_RS05030 at 983.168 kb on + strand, within ABIE40_RS05030 at 983.168 kb on + strand, within ABIE40_RS05030 at 983.168 kb on + strand, within ABIE40_RS05030 at 983.169 kb on - strand, within ABIE40_RS05030 at 983.169 kb on - strand, within ABIE40_RS05030 at 983.169 kb on - strand, within ABIE40_RS05030 at 983.169 kb on - strand, within ABIE40_RS05030 at 983.169 kb on - strand, within ABIE40_RS05030 at 983.265 kb on + strand, within ABIE40_RS05030 at 983.265 kb on + strand, within ABIE40_RS05030 at 983.266 kb on - strand, within ABIE40_RS05030 at 983.314 kb on - strand, within ABIE40_RS05030 at 983.314 kb on - strand, within ABIE40_RS05030 at 983.376 kb on - strand, within ABIE40_RS05030 at 983.376 kb on - strand, within ABIE40_RS05030 at 983.513 kb on + strand, within ABIE40_RS05030 at 983.513 kb on + strand, within ABIE40_RS05030 at 983.513 kb on + strand, within ABIE40_RS05030 at 983.514 kb on - strand, within ABIE40_RS05030 at 983.514 kb on - strand, within ABIE40_RS05030 at 983.655 kb on + strand at 983.655 kb on + strand at 983.655 kb on + strand at 983.655 kb on + strand at 983.655 kb on + strand at 983.655 kb on + strand at 983.656 kb on - strand at 983.667 kb on + strand at 983.821 kb on + strand at 983.821 kb on + strand at 983.822 kb on - strand at 983.877 kb on + strand at 983.877 kb on + strand at 983.877 kb on + strand at 983.877 kb on + strand at 983.877 kb on + strand at 983.877 kb on + strand at 983.878 kb on - strand at 983.878 kb on - strand at 984.195 kb on + strand at 984.196 kb on - strand at 984.282 kb on + strand, within ABIE40_RS05035 at 984.282 kb on + strand, within ABIE40_RS05035 at 984.283 kb on - strand, within ABIE40_RS05035 at 984.283 kb on - strand, within ABIE40_RS05035 at 984.500 kb on + strand, within ABIE40_RS05035 at 984.500 kb on + strand, within ABIE40_RS05035 at 984.500 kb on + strand, within ABIE40_RS05035 at 984.500 kb on + strand, within ABIE40_RS05035 at 984.500 kb on + strand, within ABIE40_RS05035 at 984.500 kb on + strand, within ABIE40_RS05035 at 984.501 kb on - strand, within ABIE40_RS05035 at 984.501 kb on - strand, within ABIE40_RS05035 at 984.501 kb on - strand, within ABIE40_RS05035 at 984.572 kb on + strand, within ABIE40_RS05035 at 984.573 kb on - strand, within ABIE40_RS05035 at 984.573 kb on - strand, within ABIE40_RS05035 at 984.573 kb on - strand, within ABIE40_RS05035
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 981,523 + +0.8 981,524 - -0.2 981,524 - -0.0 981,555 - -0.5 981,608 - +0.2 981,608 - -1.6 981,780 + -1.4 981,780 + -1.9 981,879 + -1.6 981,914 - -0.8 981,951 + +3.9 981,952 - -2.1 982,048 + ABIE40_RS05025 0.14 -1.7 982,057 - ABIE40_RS05025 0.16 -2.8 982,072 + ABIE40_RS05025 0.20 +0.2 982,072 + ABIE40_RS05025 0.20 -2.3 982,072 + ABIE40_RS05025 0.20 -1.7 982,072 + ABIE40_RS05025 0.20 -2.4 982,072 + ABIE40_RS05025 0.20 -1.4 982,073 + ABIE40_RS05025 0.20 -1.4 982,125 - ABIE40_RS05025 0.32 -1.1 982,326 + ABIE40_RS05025 0.78 -2.2 982,347 + ABIE40_RS05025 0.83 -3.4 982,419 + +1.6 982,419 + -2.7 982,481 + -0.7 982,481 + +1.2 982,481 + -0.1 982,484 + -0.6 982,484 + -1.1 982,484 + -0.5 982,484 + +0.7 982,484 + -0.5 982,484 + -1.2 982,485 - -0.6 982,485 - -1.2 982,485 - -0.5 982,485 - +0.4 982,485 - -1.4 982,592 + -1.2 982,592 + -1.3 982,592 + +0.2 982,592 + -1.5 982,593 - -0.2 982,593 - -0.8 982,593 - +1.1 982,752 - ABIE40_RS05030 0.22 +0.2 982,997 + ABIE40_RS05030 0.43 +0.4 982,997 + ABIE40_RS05030 0.43 -1.4 982,997 + ABIE40_RS05030 0.43 +0.5 982,998 - ABIE40_RS05030 0.43 -1.6 982,998 - ABIE40_RS05030 0.43 +0.0 982,998 - ABIE40_RS05030 0.43 -0.8 982,998 - ABIE40_RS05030 0.43 -0.1 982,998 - ABIE40_RS05030 0.43 +1.0 982,998 - ABIE40_RS05030 0.43 +1.2 983,004 + ABIE40_RS05030 0.43 -0.2 983,004 + ABIE40_RS05030 0.43 -1.4 983,004 + ABIE40_RS05030 0.43 +2.2 983,004 + ABIE40_RS05030 0.43 +0.2 983,005 - ABIE40_RS05030 0.43 +1.0 983,005 - ABIE40_RS05030 0.43 +0.2 983,005 - ABIE40_RS05030 0.43 -0.2 983,005 - ABIE40_RS05030 0.43 +1.2 983,054 + ABIE40_RS05030 0.48 +0.8 983,054 + ABIE40_RS05030 0.48 +0.0 983,055 - ABIE40_RS05030 0.48 +0.6 983,055 - ABIE40_RS05030 0.48 +0.3 983,132 + ABIE40_RS05030 0.54 +0.5 983,132 + ABIE40_RS05030 0.54 +0.7 983,132 + ABIE40_RS05030 0.54 -0.1 983,132 + ABIE40_RS05030 0.54 +0.8 983,132 + ABIE40_RS05030 0.54 +0.2 983,132 + ABIE40_RS05030 0.54 -1.5 983,132 + ABIE40_RS05030 0.54 -0.6 983,133 - ABIE40_RS05030 0.54 -0.2 983,133 - ABIE40_RS05030 0.54 +0.1 983,133 - ABIE40_RS05030 0.54 -0.6 983,133 - ABIE40_RS05030 0.54 +1.6 983,168 + ABIE40_RS05030 0.57 -0.4 983,168 + ABIE40_RS05030 0.57 -1.2 983,168 + ABIE40_RS05030 0.57 -0.1 983,168 + ABIE40_RS05030 0.57 +0.2 983,168 + ABIE40_RS05030 0.57 -0.8 983,168 + ABIE40_RS05030 0.57 -0.6 983,169 - ABIE40_RS05030 0.57 -1.1 983,169 - ABIE40_RS05030 0.57 -0.5 983,169 - ABIE40_RS05030 0.57 -0.6 983,169 - ABIE40_RS05030 0.57 +0.3 983,169 - ABIE40_RS05030 0.57 -1.4 983,265 + ABIE40_RS05030 0.65 -2.9 983,265 + ABIE40_RS05030 0.65 -2.8 983,266 - ABIE40_RS05030 0.65 -0.3 983,314 - ABIE40_RS05030 0.69 -0.5 983,314 - ABIE40_RS05030 0.69 -0.6 983,376 - ABIE40_RS05030 0.74 -1.1 983,376 - ABIE40_RS05030 0.74 +0.5 983,513 + ABIE40_RS05030 0.86 -0.2 983,513 + ABIE40_RS05030 0.86 -1.3 983,513 + ABIE40_RS05030 0.86 -0.8 983,514 - ABIE40_RS05030 0.86 -0.9 983,514 - ABIE40_RS05030 0.86 +0.7 983,655 + -2.3 983,655 + +0.3 983,655 + +0.7 983,655 + +0.1 983,655 + -1.4 983,655 + -0.6 983,656 - +1.8 983,667 + +0.8 983,821 + -3.0 983,821 + +0.1 983,822 - -0.4 983,877 + -0.7 983,877 + +1.7 983,877 + -0.9 983,877 + -1.7 983,877 + -0.4 983,877 + +0.7 983,878 - +1.6 983,878 - +0.0 984,195 + -1.6 984,196 - -3.5 984,282 + ABIE40_RS05035 0.19 +0.2 984,282 + ABIE40_RS05035 0.19 -0.3 984,283 - ABIE40_RS05035 0.19 -1.1 984,283 - ABIE40_RS05035 0.19 +1.4 984,500 + ABIE40_RS05035 0.43 -2.4 984,500 + ABIE40_RS05035 0.43 -0.5 984,500 + ABIE40_RS05035 0.43 -0.6 984,500 + ABIE40_RS05035 0.43 -1.3 984,500 + ABIE40_RS05035 0.43 -0.9 984,500 + ABIE40_RS05035 0.43 -0.7 984,501 - ABIE40_RS05035 0.43 +0.2 984,501 - ABIE40_RS05035 0.43 -1.0 984,501 - ABIE40_RS05035 0.43 -0.3 984,572 + ABIE40_RS05035 0.51 +2.5 984,573 - ABIE40_RS05035 0.51 -1.0 984,573 - ABIE40_RS05035 0.51 -0.3 984,573 - ABIE40_RS05035 0.51 +2.7
Or see this region's nucleotide sequence