Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02105 and ABIE40_RS02110 are separated by 188 nucleotides ABIE40_RS02110 and ABIE40_RS02115 are separated by 186 nucleotides ABIE40_RS02115 and ABIE40_RS02120 are separated by 34 nucleotides
ABIE40_RS02105: ABIE40_RS02105 - dihydroorotase, at 412,925 to 413,965
_RS02105
ABIE40_RS02110: ABIE40_RS02110 - GGDEF domain-containing protein, at 414,154 to 415,335
_RS02110
ABIE40_RS02115: ABIE40_RS02115 - VOC family protein, at 415,522 to 416,058
_RS02115
ABIE40_RS02120: ABIE40_RS02120 - anthrone oxygenase family protein, at 416,093 to 416,575
_RS02120
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 413.721 kb on - strand, within ABIE40_RS02105 at 413.955 kb on + strand at 413.968 kb on - strand at 414.012 kb on + strand at 414.013 kb on - strand at 414.013 kb on - strand at 414.035 kb on - strand at 414.076 kb on + strand at 414.076 kb on + strand at 414.077 kb on - strand at 414.118 kb on + strand at 414.146 kb on - strand at 414.166 kb on + strand at 414.167 kb on - strand at 414.167 kb on - strand at 414.168 kb on + strand at 414.168 kb on + strand at 414.168 kb on + strand at 414.169 kb on - strand at 414.169 kb on - strand at 414.311 kb on - strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.319 kb on + strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.320 kb on - strand, within ABIE40_RS02110 at 414.496 kb on + strand, within ABIE40_RS02110 at 414.496 kb on + strand, within ABIE40_RS02110 at 414.496 kb on + strand, within ABIE40_RS02110 at 414.565 kb on + strand, within ABIE40_RS02110 at 414.565 kb on + strand, within ABIE40_RS02110 at 414.566 kb on - strand, within ABIE40_RS02110 at 414.619 kb on + strand, within ABIE40_RS02110 at 414.619 kb on + strand, within ABIE40_RS02110 at 414.620 kb on - strand, within ABIE40_RS02110 at 414.635 kb on + strand, within ABIE40_RS02110 at 414.635 kb on + strand, within ABIE40_RS02110 at 414.647 kb on + strand, within ABIE40_RS02110 at 414.647 kb on + strand, within ABIE40_RS02110 at 415.113 kb on + strand, within ABIE40_RS02110 at 415.113 kb on + strand, within ABIE40_RS02110 at 415.114 kb on - strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.135 kb on + strand, within ABIE40_RS02110 at 415.136 kb on - strand, within ABIE40_RS02110 at 415.136 kb on - strand, within ABIE40_RS02110 at 415.136 kb on - strand, within ABIE40_RS02110 at 415.136 kb on - strand, within ABIE40_RS02110 at 415.136 kb on - strand, within ABIE40_RS02110 at 415.137 kb on + strand, within ABIE40_RS02110 at 415.243 kb on + strand at 415.243 kb on + strand at 415.243 kb on + strand at 415.243 kb on + strand at 415.243 kb on + strand at 415.354 kb on + strand at 415.354 kb on + strand at 415.354 kb on + strand at 415.355 kb on - strand at 415.355 kb on - strand at 415.355 kb on - strand at 415.355 kb on - strand at 415.587 kb on + strand, within ABIE40_RS02115 at 415.587 kb on + strand, within ABIE40_RS02115 at 415.588 kb on - strand, within ABIE40_RS02115 at 415.588 kb on - strand, within ABIE40_RS02115 at 415.654 kb on - strand, within ABIE40_RS02115 at 415.654 kb on - strand, within ABIE40_RS02115 at 415.654 kb on - strand, within ABIE40_RS02115 at 415.762 kb on + strand, within ABIE40_RS02115 at 415.762 kb on + strand, within ABIE40_RS02115 at 415.763 kb on - strand, within ABIE40_RS02115 at 415.763 kb on - strand, within ABIE40_RS02115 at 415.825 kb on + strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.826 kb on - strand, within ABIE40_RS02115 at 415.957 kb on + strand, within ABIE40_RS02115 at 415.963 kb on + strand, within ABIE40_RS02115 at 415.963 kb on + strand, within ABIE40_RS02115 at 415.964 kb on - strand, within ABIE40_RS02115 at 415.964 kb on - strand, within ABIE40_RS02115 at 416.096 kb on + strand at 416.105 kb on - strand at 416.184 kb on + strand, within ABIE40_RS02120 at 416.185 kb on - strand, within ABIE40_RS02120 at 416.290 kb on + strand, within ABIE40_RS02120 at 416.290 kb on + strand, within ABIE40_RS02120 at 416.291 kb on - strand, within ABIE40_RS02120 at 416.291 kb on - strand, within ABIE40_RS02120 at 416.292 kb on + strand, within ABIE40_RS02120 at 416.292 kb on + strand, within ABIE40_RS02120 at 416.292 kb on + strand, within ABIE40_RS02120 at 416.292 kb on + strand, within ABIE40_RS02120 at 416.292 kb on + strand, within ABIE40_RS02120 at 416.293 kb on - strand, within ABIE40_RS02120 at 416.293 kb on - strand, within ABIE40_RS02120 at 416.293 kb on - strand, within ABIE40_RS02120 at 416.293 kb on - strand, within ABIE40_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 413,721 - ABIE40_RS02105 0.76 -0.3 413,955 + -0.2 413,968 - +0.2 414,012 + -0.5 414,013 - +0.6 414,013 - -1.2 414,035 - +0.3 414,076 + -0.3 414,076 + +1.5 414,077 - +0.2 414,118 + -0.0 414,146 - -0.6 414,166 + -1.4 414,167 - -0.0 414,167 - -2.0 414,168 + +0.9 414,168 + -0.6 414,168 + -0.1 414,169 - +0.0 414,169 - -1.8 414,311 - ABIE40_RS02110 0.13 +0.9 414,319 + ABIE40_RS02110 0.14 -3.0 414,319 + ABIE40_RS02110 0.14 +0.1 414,319 + ABIE40_RS02110 0.14 +0.1 414,319 + ABIE40_RS02110 0.14 -0.2 414,319 + ABIE40_RS02110 0.14 +0.2 414,319 + ABIE40_RS02110 0.14 -2.3 414,319 + ABIE40_RS02110 0.14 -0.1 414,319 + ABIE40_RS02110 0.14 +0.1 414,319 + ABIE40_RS02110 0.14 -0.7 414,319 + ABIE40_RS02110 0.14 +1.7 414,319 + ABIE40_RS02110 0.14 -0.7 414,319 + ABIE40_RS02110 0.14 -1.0 414,319 + ABIE40_RS02110 0.14 -0.2 414,319 + ABIE40_RS02110 0.14 -0.4 414,319 + ABIE40_RS02110 0.14 +0.3 414,320 - ABIE40_RS02110 0.14 -1.3 414,320 - ABIE40_RS02110 0.14 +3.6 414,320 - ABIE40_RS02110 0.14 -0.3 414,320 - ABIE40_RS02110 0.14 +1.0 414,320 - ABIE40_RS02110 0.14 -1.8 414,320 - ABIE40_RS02110 0.14 -2.2 414,320 - ABIE40_RS02110 0.14 +1.8 414,320 - ABIE40_RS02110 0.14 -0.5 414,320 - ABIE40_RS02110 0.14 -0.5 414,496 + ABIE40_RS02110 0.29 +1.6 414,496 + ABIE40_RS02110 0.29 -0.2 414,496 + ABIE40_RS02110 0.29 -0.5 414,565 + ABIE40_RS02110 0.35 -0.7 414,565 + ABIE40_RS02110 0.35 -1.1 414,566 - ABIE40_RS02110 0.35 -0.6 414,619 + ABIE40_RS02110 0.39 -0.1 414,619 + ABIE40_RS02110 0.39 -0.3 414,620 - ABIE40_RS02110 0.39 +0.1 414,635 + ABIE40_RS02110 0.41 +0.2 414,635 + ABIE40_RS02110 0.41 -2.0 414,647 + ABIE40_RS02110 0.42 +1.9 414,647 + ABIE40_RS02110 0.42 +1.0 415,113 + ABIE40_RS02110 0.81 -0.2 415,113 + ABIE40_RS02110 0.81 +0.7 415,114 - ABIE40_RS02110 0.81 -0.3 415,135 + ABIE40_RS02110 0.83 -0.4 415,135 + ABIE40_RS02110 0.83 -1.3 415,135 + ABIE40_RS02110 0.83 +0.4 415,135 + ABIE40_RS02110 0.83 +0.8 415,135 + ABIE40_RS02110 0.83 +0.1 415,135 + ABIE40_RS02110 0.83 +0.4 415,135 + ABIE40_RS02110 0.83 -1.1 415,135 + ABIE40_RS02110 0.83 -0.1 415,135 + ABIE40_RS02110 0.83 -0.0 415,135 + ABIE40_RS02110 0.83 -0.8 415,135 + ABIE40_RS02110 0.83 +0.4 415,135 + ABIE40_RS02110 0.83 -1.4 415,136 - ABIE40_RS02110 0.83 -0.2 415,136 - ABIE40_RS02110 0.83 +1.0 415,136 - ABIE40_RS02110 0.83 -0.8 415,136 - ABIE40_RS02110 0.83 -0.1 415,136 - ABIE40_RS02110 0.83 -0.3 415,137 + ABIE40_RS02110 0.83 -0.9 415,243 + -0.7 415,243 + -0.9 415,243 + -0.3 415,243 + +1.8 415,243 + +0.5 415,354 + -1.4 415,354 + -0.7 415,354 + +0.7 415,355 - -1.3 415,355 - +2.4 415,355 - -0.8 415,355 - -0.0 415,587 + ABIE40_RS02115 0.12 -0.4 415,587 + ABIE40_RS02115 0.12 +0.6 415,588 - ABIE40_RS02115 0.12 -1.2 415,588 - ABIE40_RS02115 0.12 -1.2 415,654 - ABIE40_RS02115 0.25 -0.1 415,654 - ABIE40_RS02115 0.25 -0.7 415,654 - ABIE40_RS02115 0.25 -0.3 415,762 + ABIE40_RS02115 0.45 -2.0 415,762 + ABIE40_RS02115 0.45 -1.0 415,763 - ABIE40_RS02115 0.45 -2.2 415,763 - ABIE40_RS02115 0.45 -0.8 415,825 + ABIE40_RS02115 0.56 +1.6 415,826 - ABIE40_RS02115 0.57 -0.4 415,826 - ABIE40_RS02115 0.57 +1.2 415,826 - ABIE40_RS02115 0.57 +0.1 415,826 - ABIE40_RS02115 0.57 +0.2 415,826 - ABIE40_RS02115 0.57 +0.2 415,826 - ABIE40_RS02115 0.57 -1.5 415,826 - ABIE40_RS02115 0.57 +0.1 415,957 + ABIE40_RS02115 0.81 +0.1 415,963 + ABIE40_RS02115 0.82 -1.7 415,963 + ABIE40_RS02115 0.82 -0.2 415,964 - ABIE40_RS02115 0.82 +0.2 415,964 - ABIE40_RS02115 0.82 +0.0 416,096 + -0.3 416,105 - +0.3 416,184 + ABIE40_RS02120 0.19 -0.0 416,185 - ABIE40_RS02120 0.19 +0.3 416,290 + ABIE40_RS02120 0.41 +0.4 416,290 + ABIE40_RS02120 0.41 -1.4 416,291 - ABIE40_RS02120 0.41 +0.2 416,291 - ABIE40_RS02120 0.41 +1.5 416,292 + ABIE40_RS02120 0.41 +0.6 416,292 + ABIE40_RS02120 0.41 -0.6 416,292 + ABIE40_RS02120 0.41 +0.8 416,292 + ABIE40_RS02120 0.41 -1.1 416,292 + ABIE40_RS02120 0.41 +2.1 416,293 - ABIE40_RS02120 0.41 +0.9 416,293 - ABIE40_RS02120 0.41 +0.8 416,293 - ABIE40_RS02120 0.41 +2.0 416,293 - ABIE40_RS02120 0.41 +0.2
Or see this region's nucleotide sequence