Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00625 and ABIE40_RS00630 overlap by 4 nucleotides ABIE40_RS00630 and ABIE40_RS00635 are separated by 8 nucleotides
ABIE40_RS00625: ABIE40_RS00625 - ABC transporter permease, at 128,882 to 130,030
_RS00625
ABIE40_RS00630: ABIE40_RS00630 - ABC transporter ATP-binding protein, at 130,027 to 131,664
_RS00630
ABIE40_RS00635: ABIE40_RS00635 - glyoxylate/hydroxypyruvate reductase A, at 131,673 to 132,632
_RS00635
Position (kb) 130
131
132 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 129.083 kb on + strand, within ABIE40_RS00625 at 129.083 kb on + strand, within ABIE40_RS00625 at 129.083 kb on + strand, within ABIE40_RS00625 at 129.084 kb on - strand, within ABIE40_RS00625 at 129.119 kb on + strand, within ABIE40_RS00625 at 129.162 kb on - strand, within ABIE40_RS00625 at 129.227 kb on + strand, within ABIE40_RS00625 at 129.227 kb on + strand, within ABIE40_RS00625 at 129.227 kb on + strand, within ABIE40_RS00625 at 129.228 kb on - strand, within ABIE40_RS00625 at 129.228 kb on - strand, within ABIE40_RS00625 at 129.233 kb on + strand, within ABIE40_RS00625 at 129.350 kb on + strand, within ABIE40_RS00625 at 129.350 kb on + strand, within ABIE40_RS00625 at 129.351 kb on - strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.425 kb on - strand, within ABIE40_RS00625 at 129.500 kb on + strand, within ABIE40_RS00625 at 129.501 kb on - strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.701 kb on + strand, within ABIE40_RS00625 at 129.702 kb on - strand, within ABIE40_RS00625 at 129.702 kb on - strand, within ABIE40_RS00625 at 129.702 kb on - strand, within ABIE40_RS00625 at 129.857 kb on - strand, within ABIE40_RS00625 at 130.216 kb on + strand, within ABIE40_RS00630 at 130.410 kb on - strand, within ABIE40_RS00630 at 130.446 kb on - strand, within ABIE40_RS00630 at 130.789 kb on + strand, within ABIE40_RS00630 at 130.789 kb on + strand, within ABIE40_RS00630 at 130.789 kb on + strand, within ABIE40_RS00630 at 130.790 kb on - strand, within ABIE40_RS00630 at 130.790 kb on - strand, within ABIE40_RS00630 at 130.790 kb on - strand, within ABIE40_RS00630 at 130.791 kb on + strand, within ABIE40_RS00630 at 130.792 kb on - strand, within ABIE40_RS00630 at 130.931 kb on + strand, within ABIE40_RS00630 at 131.080 kb on - strand, within ABIE40_RS00630 at 131.081 kb on + strand, within ABIE40_RS00630 at 131.081 kb on + strand, within ABIE40_RS00630 at 131.081 kb on + strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.082 kb on - strand, within ABIE40_RS00630 at 131.149 kb on + strand, within ABIE40_RS00630 at 131.207 kb on + strand, within ABIE40_RS00630 at 131.207 kb on + strand, within ABIE40_RS00630 at 131.471 kb on - strand, within ABIE40_RS00630 at 131.471 kb on - strand, within ABIE40_RS00630 at 131.596 kb on + strand at 131.596 kb on + strand at 131.597 kb on - strand at 131.662 kb on + strand at 131.663 kb on - strand at 131.663 kb on - strand at 131.663 kb on - strand at 131.663 kb on - strand at 131.663 kb on - strand at 131.817 kb on + strand, within ABIE40_RS00635 at 131.903 kb on + strand, within ABIE40_RS00635 at 131.904 kb on - strand, within ABIE40_RS00635 at 132.252 kb on + strand, within ABIE40_RS00635 at 132.300 kb on + strand, within ABIE40_RS00635 at 132.300 kb on + strand, within ABIE40_RS00635 at 132.300 kb on + strand, within ABIE40_RS00635 at 132.300 kb on + strand, within ABIE40_RS00635 at 132.300 kb on + strand, within ABIE40_RS00635 at 132.301 kb on - strand, within ABIE40_RS00635 at 132.301 kb on - strand, within ABIE40_RS00635 at 132.301 kb on - strand, within ABIE40_RS00635 at 132.400 kb on + strand, within ABIE40_RS00635
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 129,083 + ABIE40_RS00625 0.17 -2.2 129,083 + ABIE40_RS00625 0.17 -2.7 129,083 + ABIE40_RS00625 0.17 -1.1 129,084 - ABIE40_RS00625 0.18 -1.7 129,119 + ABIE40_RS00625 0.21 +0.1 129,162 - ABIE40_RS00625 0.24 -1.7 129,227 + ABIE40_RS00625 0.30 -0.8 129,227 + ABIE40_RS00625 0.30 -2.9 129,227 + ABIE40_RS00625 0.30 -2.1 129,228 - ABIE40_RS00625 0.30 -3.3 129,228 - ABIE40_RS00625 0.30 -1.2 129,233 + ABIE40_RS00625 0.31 -2.6 129,350 + ABIE40_RS00625 0.41 -2.3 129,350 + ABIE40_RS00625 0.41 -3.9 129,351 - ABIE40_RS00625 0.41 -1.3 129,413 + ABIE40_RS00625 0.46 -3.1 129,413 + ABIE40_RS00625 0.46 -1.4 129,413 + ABIE40_RS00625 0.46 -3.7 129,413 + ABIE40_RS00625 0.46 -1.3 129,413 + ABIE40_RS00625 0.46 -2.4 129,414 - ABIE40_RS00625 0.46 +1.0 129,414 - ABIE40_RS00625 0.46 -2.0 129,414 - ABIE40_RS00625 0.46 -1.0 129,414 - ABIE40_RS00625 0.46 -2.0 129,414 - ABIE40_RS00625 0.46 +2.0 129,424 + ABIE40_RS00625 0.47 -0.3 129,424 + ABIE40_RS00625 0.47 -2.1 129,424 + ABIE40_RS00625 0.47 -2.5 129,424 + ABIE40_RS00625 0.47 -2.2 129,425 - ABIE40_RS00625 0.47 -0.0 129,500 + ABIE40_RS00625 0.54 -1.7 129,501 - ABIE40_RS00625 0.54 -1.9 129,569 + ABIE40_RS00625 0.60 -2.2 129,569 + ABIE40_RS00625 0.60 -1.6 129,569 + ABIE40_RS00625 0.60 -3.0 129,569 + ABIE40_RS00625 0.60 -2.3 129,570 - ABIE40_RS00625 0.60 -1.9 129,570 - ABIE40_RS00625 0.60 -4.1 129,570 - ABIE40_RS00625 0.60 -3.3 129,570 - ABIE40_RS00625 0.60 -4.6 129,701 + ABIE40_RS00625 0.71 +0.4 129,702 - ABIE40_RS00625 0.71 -1.1 129,702 - ABIE40_RS00625 0.71 -2.1 129,702 - ABIE40_RS00625 0.71 -1.5 129,857 - ABIE40_RS00625 0.85 -1.6 130,216 + ABIE40_RS00630 0.12 -3.9 130,410 - ABIE40_RS00630 0.23 -0.3 130,446 - ABIE40_RS00630 0.26 -4.5 130,789 + ABIE40_RS00630 0.47 -2.2 130,789 + ABIE40_RS00630 0.47 -4.2 130,789 + ABIE40_RS00630 0.47 -3.2 130,790 - ABIE40_RS00630 0.47 -3.7 130,790 - ABIE40_RS00630 0.47 -0.8 130,790 - ABIE40_RS00630 0.47 -3.2 130,791 + ABIE40_RS00630 0.47 -1.8 130,792 - ABIE40_RS00630 0.47 -0.8 130,931 + ABIE40_RS00630 0.55 -5.1 131,080 - ABIE40_RS00630 0.64 +1.6 131,081 + ABIE40_RS00630 0.64 -1.6 131,081 + ABIE40_RS00630 0.64 -1.9 131,081 + ABIE40_RS00630 0.64 -2.7 131,082 - ABIE40_RS00630 0.64 -2.6 131,082 - ABIE40_RS00630 0.64 -4.6 131,082 - ABIE40_RS00630 0.64 -1.5 131,082 - ABIE40_RS00630 0.64 -3.0 131,082 - ABIE40_RS00630 0.64 -2.2 131,082 - ABIE40_RS00630 0.64 -1.2 131,082 - ABIE40_RS00630 0.64 -0.9 131,149 + ABIE40_RS00630 0.68 -2.1 131,207 + ABIE40_RS00630 0.72 -2.1 131,207 + ABIE40_RS00630 0.72 -1.3 131,471 - ABIE40_RS00630 0.88 -2.8 131,471 - ABIE40_RS00630 0.88 -3.7 131,596 + -1.6 131,596 + -1.5 131,597 - -0.7 131,662 + +1.2 131,663 - -0.2 131,663 - -0.2 131,663 - +2.0 131,663 - +0.5 131,663 - -1.0 131,817 + ABIE40_RS00635 0.15 +0.6 131,903 + ABIE40_RS00635 0.24 -0.3 131,904 - ABIE40_RS00635 0.24 +0.9 132,252 + ABIE40_RS00635 0.60 +0.1 132,300 + ABIE40_RS00635 0.65 +0.1 132,300 + ABIE40_RS00635 0.65 -1.6 132,300 + ABIE40_RS00635 0.65 -2.2 132,300 + ABIE40_RS00635 0.65 -2.6 132,300 + ABIE40_RS00635 0.65 -0.4 132,301 - ABIE40_RS00635 0.65 -0.3 132,301 - ABIE40_RS00635 0.65 +0.0 132,301 - ABIE40_RS00635 0.65 +0.8 132,400 + ABIE40_RS00635 0.76 +1.1
Or see this region's nucleotide sequence