Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00060 and ABIE40_RS00065 are separated by 33 nucleotides ABIE40_RS00065 and ABIE40_RS00070 are separated by 42 nucleotides ABIE40_RS00070 and ABIE40_RS00075 are separated by 24 nucleotides
ABIE40_RS00060: ABIE40_RS00060 - hydroxyacid dehydrogenase, at 13,121 to 14,134
_RS00060
ABIE40_RS00065: ABIE40_RS00065 - Gfo/Idh/MocA family oxidoreductase, at 14,168 to 15,442
_RS00065
ABIE40_RS00070: ABIE40_RS00070 - sugar phosphate isomerase/epimerase family protein, at 15,485 to 16,315
_RS00070
ABIE40_RS00075: ABIE40_RS00075 - dihydrodipicolinate synthase family protein, at 16,340 to 17,506
_RS00075
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 13.290 kb on + strand, within ABIE40_RS00060 at 13.290 kb on + strand, within ABIE40_RS00060 at 13.290 kb on + strand, within ABIE40_RS00060 at 13.291 kb on - strand, within ABIE40_RS00060 at 13.291 kb on - strand, within ABIE40_RS00060 at 13.291 kb on - strand, within ABIE40_RS00060 at 13.407 kb on + strand, within ABIE40_RS00060 at 13.407 kb on + strand, within ABIE40_RS00060 at 13.407 kb on + strand, within ABIE40_RS00060 at 13.407 kb on + strand, within ABIE40_RS00060 at 13.408 kb on - strand, within ABIE40_RS00060 at 13.408 kb on - strand, within ABIE40_RS00060 at 13.527 kb on - strand, within ABIE40_RS00060 at 13.527 kb on - strand, within ABIE40_RS00060 at 13.527 kb on - strand, within ABIE40_RS00060 at 13.551 kb on + strand, within ABIE40_RS00060 at 13.552 kb on + strand, within ABIE40_RS00060 at 13.552 kb on + strand, within ABIE40_RS00060 at 13.553 kb on - strand, within ABIE40_RS00060 at 13.557 kb on - strand, within ABIE40_RS00060 at 13.557 kb on - strand, within ABIE40_RS00060 at 13.557 kb on - strand, within ABIE40_RS00060 at 13.557 kb on - strand, within ABIE40_RS00060 at 13.586 kb on + strand, within ABIE40_RS00060 at 13.587 kb on - strand, within ABIE40_RS00060 at 13.587 kb on - strand, within ABIE40_RS00060 at 13.760 kb on - strand, within ABIE40_RS00060 at 13.855 kb on + strand, within ABIE40_RS00060 at 13.973 kb on + strand, within ABIE40_RS00060 at 13.973 kb on + strand, within ABIE40_RS00060 at 13.973 kb on + strand, within ABIE40_RS00060 at 13.973 kb on + strand, within ABIE40_RS00060 at 13.974 kb on - strand, within ABIE40_RS00060 at 13.974 kb on - strand, within ABIE40_RS00060 at 14.025 kb on + strand, within ABIE40_RS00060 at 14.025 kb on + strand, within ABIE40_RS00060 at 14.097 kb on - strand at 14.272 kb on + strand at 14.335 kb on + strand, within ABIE40_RS00065 at 14.335 kb on + strand, within ABIE40_RS00065 at 14.335 kb on + strand, within ABIE40_RS00065 at 14.379 kb on + strand, within ABIE40_RS00065 at 14.379 kb on + strand, within ABIE40_RS00065 at 14.379 kb on + strand, within ABIE40_RS00065 at 14.380 kb on - strand, within ABIE40_RS00065 at 14.380 kb on - strand, within ABIE40_RS00065 at 14.410 kb on + strand, within ABIE40_RS00065 at 14.411 kb on - strand, within ABIE40_RS00065 at 14.497 kb on - strand, within ABIE40_RS00065 at 14.497 kb on - strand, within ABIE40_RS00065 at 14.593 kb on + strand, within ABIE40_RS00065 at 14.593 kb on + strand, within ABIE40_RS00065 at 14.593 kb on + strand, within ABIE40_RS00065 at 14.593 kb on + strand, within ABIE40_RS00065 at 14.594 kb on - strand, within ABIE40_RS00065 at 14.670 kb on + strand, within ABIE40_RS00065 at 14.670 kb on + strand, within ABIE40_RS00065 at 14.670 kb on + strand, within ABIE40_RS00065 at 14.671 kb on - strand, within ABIE40_RS00065 at 14.697 kb on + strand, within ABIE40_RS00065 at 14.736 kb on + strand, within ABIE40_RS00065 at 14.736 kb on + strand, within ABIE40_RS00065 at 14.737 kb on - strand, within ABIE40_RS00065 at 14.739 kb on + strand, within ABIE40_RS00065 at 14.739 kb on + strand, within ABIE40_RS00065 at 14.739 kb on + strand, within ABIE40_RS00065 at 14.739 kb on + strand, within ABIE40_RS00065 at 14.740 kb on - strand, within ABIE40_RS00065 at 14.740 kb on - strand, within ABIE40_RS00065 at 14.740 kb on - strand, within ABIE40_RS00065 at 14.805 kb on + strand, within ABIE40_RS00065 at 14.856 kb on + strand, within ABIE40_RS00065 at 14.856 kb on + strand, within ABIE40_RS00065 at 14.921 kb on - strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.922 kb on + strand, within ABIE40_RS00065 at 14.923 kb on - strand, within ABIE40_RS00065 at 14.923 kb on - strand, within ABIE40_RS00065 at 14.923 kb on - strand, within ABIE40_RS00065 at 14.923 kb on - strand, within ABIE40_RS00065 at 14.923 kb on - strand, within ABIE40_RS00065 at 14.923 kb on - strand, within ABIE40_RS00065 at 14.970 kb on + strand, within ABIE40_RS00065 at 15.052 kb on - strand, within ABIE40_RS00065 at 15.057 kb on + strand, within ABIE40_RS00065 at 15.058 kb on - strand, within ABIE40_RS00065 at 15.058 kb on - strand, within ABIE40_RS00065 at 15.058 kb on - strand, within ABIE40_RS00065 at 15.270 kb on + strand, within ABIE40_RS00065 at 15.270 kb on + strand, within ABIE40_RS00065 at 15.271 kb on - strand, within ABIE40_RS00065 at 15.271 kb on - strand, within ABIE40_RS00065 at 15.271 kb on - strand, within ABIE40_RS00065 at 15.271 kb on - strand, within ABIE40_RS00065 at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.476 kb on + strand at 15.476 kb on + strand at 15.476 kb on + strand at 15.476 kb on + strand at 15.476 kb on + strand at 15.477 kb on - strand at 15.477 kb on - strand at 15.477 kb on - strand at 15.477 kb on - strand at 15.478 kb on + strand at 15.479 kb on - strand at 15.479 kb on - strand at 15.487 kb on - strand at 15.502 kb on + strand at 15.502 kb on + strand at 15.502 kb on + strand at 15.502 kb on + strand at 15.502 kb on + strand at 15.502 kb on + strand at 15.502 kb on + strand at 15.503 kb on - strand at 15.503 kb on - strand at 15.503 kb on - strand at 15.503 kb on - strand at 15.783 kb on + strand, within ABIE40_RS00070 at 15.783 kb on + strand, within ABIE40_RS00070 at 15.783 kb on + strand, within ABIE40_RS00070 at 15.783 kb on + strand, within ABIE40_RS00070 at 15.783 kb on + strand, within ABIE40_RS00070 at 15.783 kb on + strand, within ABIE40_RS00070 at 15.784 kb on - strand, within ABIE40_RS00070 at 15.784 kb on - strand, within ABIE40_RS00070 at 15.784 kb on - strand, within ABIE40_RS00070 at 15.876 kb on + strand, within ABIE40_RS00070 at 15.876 kb on + strand, within ABIE40_RS00070 at 15.876 kb on + strand, within ABIE40_RS00070 at 15.876 kb on + strand, within ABIE40_RS00070 at 15.877 kb on - strand, within ABIE40_RS00070 at 15.877 kb on - strand, within ABIE40_RS00070 at 15.877 kb on - strand, within ABIE40_RS00070 at 15.877 kb on - strand, within ABIE40_RS00070 at 15.877 kb on - strand, within ABIE40_RS00070 at 16.243 kb on + strand at 16.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 13,290 + ABIE40_RS00060 0.17 -0.4 13,290 + ABIE40_RS00060 0.17 +0.5 13,290 + ABIE40_RS00060 0.17 +1.5 13,291 - ABIE40_RS00060 0.17 -0.5 13,291 - ABIE40_RS00060 0.17 +0.1 13,291 - ABIE40_RS00060 0.17 +2.0 13,407 + ABIE40_RS00060 0.28 -0.2 13,407 + ABIE40_RS00060 0.28 -0.2 13,407 + ABIE40_RS00060 0.28 +0.8 13,407 + ABIE40_RS00060 0.28 -0.4 13,408 - ABIE40_RS00060 0.28 -1.1 13,408 - ABIE40_RS00060 0.28 +0.1 13,527 - ABIE40_RS00060 0.40 +0.7 13,527 - ABIE40_RS00060 0.40 -0.8 13,527 - ABIE40_RS00060 0.40 +0.5 13,551 + ABIE40_RS00060 0.42 +0.4 13,552 + ABIE40_RS00060 0.43 +0.9 13,552 + ABIE40_RS00060 0.43 +2.0 13,553 - ABIE40_RS00060 0.43 -0.3 13,557 - ABIE40_RS00060 0.43 +0.6 13,557 - ABIE40_RS00060 0.43 +0.5 13,557 - ABIE40_RS00060 0.43 +0.2 13,557 - ABIE40_RS00060 0.43 -0.0 13,586 + ABIE40_RS00060 0.46 +0.8 13,587 - ABIE40_RS00060 0.46 -0.4 13,587 - ABIE40_RS00060 0.46 -0.3 13,760 - ABIE40_RS00060 0.63 +0.2 13,855 + ABIE40_RS00060 0.72 +1.7 13,973 + ABIE40_RS00060 0.84 -1.8 13,973 + ABIE40_RS00060 0.84 +0.2 13,973 + ABIE40_RS00060 0.84 -0.2 13,973 + ABIE40_RS00060 0.84 +0.7 13,974 - ABIE40_RS00060 0.84 +0.6 13,974 - ABIE40_RS00060 0.84 +0.4 14,025 + ABIE40_RS00060 0.89 +2.0 14,025 + ABIE40_RS00060 0.89 +0.2 14,097 - +1.0 14,272 + +0.9 14,335 + ABIE40_RS00065 0.13 -1.6 14,335 + ABIE40_RS00065 0.13 +1.0 14,335 + ABIE40_RS00065 0.13 +0.3 14,379 + ABIE40_RS00065 0.17 -0.5 14,379 + ABIE40_RS00065 0.17 -1.7 14,379 + ABIE40_RS00065 0.17 +1.3 14,380 - ABIE40_RS00065 0.17 -0.2 14,380 - ABIE40_RS00065 0.17 +1.5 14,410 + ABIE40_RS00065 0.19 +0.8 14,411 - ABIE40_RS00065 0.19 -1.0 14,497 - ABIE40_RS00065 0.26 +0.3 14,497 - ABIE40_RS00065 0.26 -0.1 14,593 + ABIE40_RS00065 0.33 +0.1 14,593 + ABIE40_RS00065 0.33 -0.4 14,593 + ABIE40_RS00065 0.33 +0.5 14,593 + ABIE40_RS00065 0.33 +0.2 14,594 - ABIE40_RS00065 0.33 -0.9 14,670 + ABIE40_RS00065 0.39 -0.2 14,670 + ABIE40_RS00065 0.39 -1.8 14,670 + ABIE40_RS00065 0.39 +0.3 14,671 - ABIE40_RS00065 0.39 -0.2 14,697 + ABIE40_RS00065 0.41 -1.2 14,736 + ABIE40_RS00065 0.45 +0.3 14,736 + ABIE40_RS00065 0.45 -0.5 14,737 - ABIE40_RS00065 0.45 +0.2 14,739 + ABIE40_RS00065 0.45 +0.5 14,739 + ABIE40_RS00065 0.45 -0.5 14,739 + ABIE40_RS00065 0.45 +0.4 14,739 + ABIE40_RS00065 0.45 +0.8 14,740 - ABIE40_RS00065 0.45 -0.3 14,740 - ABIE40_RS00065 0.45 -0.1 14,740 - ABIE40_RS00065 0.45 +0.9 14,805 + ABIE40_RS00065 0.50 +1.6 14,856 + ABIE40_RS00065 0.54 +0.4 14,856 + ABIE40_RS00065 0.54 -1.2 14,921 - ABIE40_RS00065 0.59 -0.5 14,922 + ABIE40_RS00065 0.59 -0.8 14,922 + ABIE40_RS00065 0.59 +0.3 14,922 + ABIE40_RS00065 0.59 -0.3 14,922 + ABIE40_RS00065 0.59 +0.4 14,922 + ABIE40_RS00065 0.59 +0.4 14,922 + ABIE40_RS00065 0.59 +1.8 14,922 + ABIE40_RS00065 0.59 -1.4 14,923 - ABIE40_RS00065 0.59 +0.1 14,923 - ABIE40_RS00065 0.59 -0.8 14,923 - ABIE40_RS00065 0.59 -1.0 14,923 - ABIE40_RS00065 0.59 -0.3 14,923 - ABIE40_RS00065 0.59 -3.1 14,923 - ABIE40_RS00065 0.59 -0.2 14,970 + ABIE40_RS00065 0.63 +0.3 15,052 - ABIE40_RS00065 0.69 +2.5 15,057 + ABIE40_RS00065 0.70 +1.2 15,058 - ABIE40_RS00065 0.70 +2.4 15,058 - ABIE40_RS00065 0.70 -0.0 15,058 - ABIE40_RS00065 0.70 -0.5 15,270 + ABIE40_RS00065 0.86 -2.5 15,270 + ABIE40_RS00065 0.86 +0.7 15,271 - ABIE40_RS00065 0.87 -3.5 15,271 - ABIE40_RS00065 0.87 +0.4 15,271 - ABIE40_RS00065 0.87 +0.8 15,271 - ABIE40_RS00065 0.87 -3.5 15,460 + +2.2 15,460 + -0.0 15,460 + +0.1 15,460 + -0.1 15,461 - +1.2 15,461 - -2.6 15,461 - +0.0 15,461 - +0.5 15,476 + -1.1 15,476 + +0.3 15,476 + -1.2 15,476 + -0.6 15,476 + +0.3 15,477 - -1.3 15,477 - +0.4 15,477 - -0.7 15,477 - +0.2 15,478 + -0.3 15,479 - -1.6 15,479 - -0.2 15,487 - +0.4 15,502 + -0.7 15,502 + +0.3 15,502 + -0.3 15,502 + +0.2 15,502 + -0.4 15,502 + -0.5 15,502 + +1.2 15,503 - -0.0 15,503 - +0.5 15,503 - +0.7 15,503 - -2.3 15,783 + ABIE40_RS00070 0.36 +0.7 15,783 + ABIE40_RS00070 0.36 -2.6 15,783 + ABIE40_RS00070 0.36 -0.3 15,783 + ABIE40_RS00070 0.36 +0.8 15,783 + ABIE40_RS00070 0.36 -1.3 15,783 + ABIE40_RS00070 0.36 +0.1 15,784 - ABIE40_RS00070 0.36 +4.3 15,784 - ABIE40_RS00070 0.36 +1.1 15,784 - ABIE40_RS00070 0.36 +1.4 15,876 + ABIE40_RS00070 0.47 +0.9 15,876 + ABIE40_RS00070 0.47 +3.0 15,876 + ABIE40_RS00070 0.47 +0.7 15,876 + ABIE40_RS00070 0.47 -0.4 15,877 - ABIE40_RS00070 0.47 +1.2 15,877 - ABIE40_RS00070 0.47 -1.1 15,877 - ABIE40_RS00070 0.47 -0.1 15,877 - ABIE40_RS00070 0.47 +0.5 15,877 - ABIE40_RS00070 0.47 -1.2 16,243 + +0.3 16,244 - -0.9
Or see this region's nucleotide sequence