Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25925

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25920 and ABID97_RS25925 are separated by 10 nucleotidesABID97_RS25925 and ABID97_RS25930 are separated by 151 nucleotides ABID97_RS25920: ABID97_RS25920 - GNAT family N-acetyltransferase, at 107,509 to 108,387 _RS25920 ABID97_RS25925: ABID97_RS25925 - glyoxylate/hydroxypyruvate reductase A, at 108,398 to 109,336 _RS25925 ABID97_RS25930: ABID97_RS25930 - aspartate aminotransferase family protein, at 109,488 to 110,891 _RS25930 Position (kb) 108 109 110Strain fitness (log2 ratio) -1 0 1at 107.520 kb on + strandat 107.867 kb on - strand, within ABID97_RS25920at 108.701 kb on + strand, within ABID97_RS25925at 108.746 kb on + strand, within ABID97_RS25925at 109.840 kb on - strand, within ABID97_RS25930at 109.899 kb on + strand, within ABID97_RS25930at 110.041 kb on - strand, within ABID97_RS25930

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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107,520 + -0.8
107,867 - ABID97_RS25920 0.41 +0.0
108,701 + ABID97_RS25925 0.32 -0.6
108,746 + ABID97_RS25925 0.37 -1.0
109,840 - ABID97_RS25930 0.25 +1.1
109,899 + ABID97_RS25930 0.29 +0.2
110,041 - ABID97_RS25930 0.39 +0.0

Or see this region's nucleotide sequence