Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25195 and ABID97_RS25200 are separated by 165 nucleotides ABID97_RS25200 and ABID97_RS25205 are separated by 12 nucleotides ABID97_RS25205 and ABID97_RS25210 are separated by 66 nucleotides
ABID97_RS25195: ABID97_RS25195 - acetyl-CoA C-acyltransferase, at 5,219,935 to 5,221,119
_RS25195
ABID97_RS25200: ABID97_RS25200 - hypothetical protein, at 5,221,285 to 5,221,899
_RS25200
ABID97_RS25205: ABID97_RS25205 - hypothetical protein, at 5,221,912 to 5,222,781
_RS25205
ABID97_RS25210: ABID97_RS25210 - glutamate carboxypeptidase, at 5,222,848 to 5,224,098
_RS25210
Position (kb) 5221
5222 Strain fitness (log2 ratio) -1
0
1
2 at 5220.392 kb on - strand, within ABID97_RS25195 at 5220.442 kb on + strand, within ABID97_RS25195 at 5220.442 kb on + strand, within ABID97_RS25195 at 5220.442 kb on + strand, within ABID97_RS25195 at 5220.443 kb on - strand, within ABID97_RS25195 at 5220.443 kb on - strand, within ABID97_RS25195 at 5220.443 kb on - strand, within ABID97_RS25195 at 5221.112 kb on + strand at 5221.113 kb on - strand at 5221.113 kb on - strand at 5221.118 kb on - strand at 5221.118 kb on - strand at 5221.127 kb on + strand at 5221.128 kb on - strand at 5221.136 kb on + strand at 5221.144 kb on - strand at 5221.161 kb on - strand at 5221.169 kb on - strand at 5221.214 kb on - strand at 5221.214 kb on - strand at 5221.214 kb on - strand at 5221.256 kb on - strand at 5221.380 kb on - strand, within ABID97_RS25200 at 5221.380 kb on - strand, within ABID97_RS25200 at 5221.380 kb on - strand, within ABID97_RS25200 at 5221.472 kb on + strand, within ABID97_RS25200 at 5221.473 kb on - strand, within ABID97_RS25200 at 5221.537 kb on + strand, within ABID97_RS25200 at 5221.537 kb on + strand, within ABID97_RS25200 at 5221.537 kb on + strand, within ABID97_RS25200 at 5221.537 kb on + strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.538 kb on - strand, within ABID97_RS25200 at 5221.565 kb on - strand, within ABID97_RS25200 at 5221.565 kb on - strand, within ABID97_RS25200 at 5221.565 kb on - strand, within ABID97_RS25200 at 5221.565 kb on - strand, within ABID97_RS25200 at 5221.633 kb on + strand, within ABID97_RS25200 at 5221.633 kb on + strand, within ABID97_RS25200 at 5221.633 kb on + strand, within ABID97_RS25200 at 5221.786 kb on + strand, within ABID97_RS25200 at 5221.786 kb on + strand, within ABID97_RS25200 at 5221.786 kb on + strand, within ABID97_RS25200 at 5221.787 kb on - strand, within ABID97_RS25200 at 5221.787 kb on - strand, within ABID97_RS25200 at 5221.787 kb on - strand, within ABID97_RS25200 at 5221.835 kb on + strand, within ABID97_RS25200 at 5221.835 kb on + strand, within ABID97_RS25200 at 5221.836 kb on - strand, within ABID97_RS25200 at 5221.836 kb on - strand, within ABID97_RS25200 at 5221.836 kb on - strand, within ABID97_RS25200 at 5221.836 kb on - strand, within ABID97_RS25200 at 5221.836 kb on - strand, within ABID97_RS25200 at 5221.955 kb on + strand at 5221.956 kb on - strand at 5221.984 kb on + strand at 5221.985 kb on - strand at 5221.994 kb on + strand at 5222.003 kb on - strand, within ABID97_RS25205 at 5222.021 kb on + strand, within ABID97_RS25205 at 5222.022 kb on - strand, within ABID97_RS25205 at 5222.055 kb on - strand, within ABID97_RS25205 at 5222.055 kb on - strand, within ABID97_RS25205 at 5222.078 kb on - strand, within ABID97_RS25205 at 5222.078 kb on - strand, within ABID97_RS25205 at 5222.248 kb on + strand, within ABID97_RS25205 at 5222.265 kb on + strand, within ABID97_RS25205 at 5222.265 kb on + strand, within ABID97_RS25205 at 5222.265 kb on + strand, within ABID97_RS25205 at 5222.265 kb on + strand, within ABID97_RS25205 at 5222.265 kb on + strand, within ABID97_RS25205 at 5222.266 kb on - strand, within ABID97_RS25205 at 5222.266 kb on - strand, within ABID97_RS25205 at 5222.266 kb on - strand, within ABID97_RS25205 at 5222.266 kb on - strand, within ABID97_RS25205 at 5222.266 kb on - strand, within ABID97_RS25205 at 5222.266 kb on - strand, within ABID97_RS25205 at 5222.279 kb on + strand, within ABID97_RS25205 at 5222.280 kb on - strand, within ABID97_RS25205 at 5222.365 kb on - strand, within ABID97_RS25205 at 5222.385 kb on + strand, within ABID97_RS25205 at 5222.386 kb on - strand, within ABID97_RS25205 at 5222.438 kb on + strand, within ABID97_RS25205 at 5222.438 kb on + strand, within ABID97_RS25205 at 5222.453 kb on + strand, within ABID97_RS25205 at 5222.453 kb on + strand, within ABID97_RS25205 at 5222.454 kb on - strand, within ABID97_RS25205 at 5222.454 kb on - strand, within ABID97_RS25205 at 5222.476 kb on - strand, within ABID97_RS25205 at 5222.527 kb on + strand, within ABID97_RS25205 at 5222.527 kb on + strand, within ABID97_RS25205 at 5222.541 kb on - strand, within ABID97_RS25205 at 5222.541 kb on - strand, within ABID97_RS25205 at 5222.595 kb on - strand, within ABID97_RS25205 at 5222.595 kb on - strand, within ABID97_RS25205 at 5222.605 kb on + strand, within ABID97_RS25205 at 5222.605 kb on + strand, within ABID97_RS25205 at 5222.606 kb on - strand, within ABID97_RS25205 at 5222.606 kb on - strand, within ABID97_RS25205 at 5222.606 kb on - strand, within ABID97_RS25205 at 5222.606 kb on - strand, within ABID97_RS25205 at 5222.640 kb on + strand, within ABID97_RS25205 at 5222.790 kb on + strand at 5222.790 kb on + strand at 5222.790 kb on + strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.791 kb on - strand at 5222.810 kb on + strand at 5222.811 kb on - strand at 5222.811 kb on - strand at 5222.811 kb on - strand at 5222.851 kb on + strand at 5222.851 kb on + strand at 5222.852 kb on - strand at 5222.852 kb on - strand at 5222.874 kb on + strand at 5222.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 5,220,392 - ABID97_RS25195 0.39 +0.0 5,220,442 + ABID97_RS25195 0.43 +0.3 5,220,442 + ABID97_RS25195 0.43 -0.2 5,220,442 + ABID97_RS25195 0.43 +0.2 5,220,443 - ABID97_RS25195 0.43 +0.3 5,220,443 - ABID97_RS25195 0.43 -0.4 5,220,443 - ABID97_RS25195 0.43 -0.6 5,221,112 + -0.9 5,221,113 - -0.1 5,221,113 - +0.5 5,221,118 - +0.0 5,221,118 - +0.6 5,221,127 + -0.1 5,221,128 - -0.6 5,221,136 + +1.2 5,221,144 - -0.1 5,221,161 - +0.3 5,221,169 - +0.1 5,221,214 - -0.2 5,221,214 - +0.2 5,221,214 - -0.3 5,221,256 - +0.5 5,221,380 - ABID97_RS25200 0.15 +0.8 5,221,380 - ABID97_RS25200 0.15 -0.5 5,221,380 - ABID97_RS25200 0.15 -0.1 5,221,472 + ABID97_RS25200 0.30 +1.2 5,221,473 - ABID97_RS25200 0.31 +1.1 5,221,537 + ABID97_RS25200 0.41 -0.0 5,221,537 + ABID97_RS25200 0.41 +0.0 5,221,537 + ABID97_RS25200 0.41 +2.7 5,221,537 + ABID97_RS25200 0.41 +0.2 5,221,538 - ABID97_RS25200 0.41 +0.4 5,221,538 - ABID97_RS25200 0.41 +0.3 5,221,538 - ABID97_RS25200 0.41 -0.4 5,221,538 - ABID97_RS25200 0.41 -1.0 5,221,538 - ABID97_RS25200 0.41 -1.0 5,221,538 - ABID97_RS25200 0.41 +0.4 5,221,538 - ABID97_RS25200 0.41 +0.1 5,221,565 - ABID97_RS25200 0.46 +0.1 5,221,565 - ABID97_RS25200 0.46 -0.6 5,221,565 - ABID97_RS25200 0.46 -0.5 5,221,565 - ABID97_RS25200 0.46 +0.3 5,221,633 + ABID97_RS25200 0.57 +0.4 5,221,633 + ABID97_RS25200 0.57 -0.9 5,221,633 + ABID97_RS25200 0.57 -0.0 5,221,786 + ABID97_RS25200 0.81 +0.2 5,221,786 + ABID97_RS25200 0.81 +0.0 5,221,786 + ABID97_RS25200 0.81 +0.1 5,221,787 - ABID97_RS25200 0.82 +0.6 5,221,787 - ABID97_RS25200 0.82 +0.1 5,221,787 - ABID97_RS25200 0.82 +0.4 5,221,835 + ABID97_RS25200 0.89 +0.3 5,221,835 + ABID97_RS25200 0.89 +0.5 5,221,836 - ABID97_RS25200 0.90 +0.4 5,221,836 - ABID97_RS25200 0.90 +0.6 5,221,836 - ABID97_RS25200 0.90 +0.2 5,221,836 - ABID97_RS25200 0.90 +0.1 5,221,836 - ABID97_RS25200 0.90 +0.5 5,221,955 + +0.1 5,221,956 - -0.4 5,221,984 + +0.0 5,221,985 - +0.2 5,221,994 + +0.1 5,222,003 - ABID97_RS25205 0.10 -0.7 5,222,021 + ABID97_RS25205 0.13 -1.4 5,222,022 - ABID97_RS25205 0.13 -0.5 5,222,055 - ABID97_RS25205 0.16 +0.1 5,222,055 - ABID97_RS25205 0.16 -0.1 5,222,078 - ABID97_RS25205 0.19 +0.5 5,222,078 - ABID97_RS25205 0.19 +1.5 5,222,248 + ABID97_RS25205 0.39 +0.5 5,222,265 + ABID97_RS25205 0.41 +1.0 5,222,265 + ABID97_RS25205 0.41 +0.6 5,222,265 + ABID97_RS25205 0.41 -0.8 5,222,265 + ABID97_RS25205 0.41 -0.1 5,222,265 + ABID97_RS25205 0.41 +0.3 5,222,266 - ABID97_RS25205 0.41 -0.0 5,222,266 - ABID97_RS25205 0.41 -0.0 5,222,266 - ABID97_RS25205 0.41 -0.3 5,222,266 - ABID97_RS25205 0.41 +0.1 5,222,266 - ABID97_RS25205 0.41 +0.3 5,222,266 - ABID97_RS25205 0.41 +0.2 5,222,279 + ABID97_RS25205 0.42 -0.1 5,222,280 - ABID97_RS25205 0.42 +0.4 5,222,365 - ABID97_RS25205 0.52 +1.2 5,222,385 + ABID97_RS25205 0.54 -1.0 5,222,386 - ABID97_RS25205 0.54 -0.0 5,222,438 + ABID97_RS25205 0.60 -0.2 5,222,438 + ABID97_RS25205 0.60 -0.0 5,222,453 + ABID97_RS25205 0.62 +0.2 5,222,453 + ABID97_RS25205 0.62 -0.8 5,222,454 - ABID97_RS25205 0.62 -0.2 5,222,454 - ABID97_RS25205 0.62 -0.1 5,222,476 - ABID97_RS25205 0.65 -0.3 5,222,527 + ABID97_RS25205 0.71 -0.2 5,222,527 + ABID97_RS25205 0.71 +0.2 5,222,541 - ABID97_RS25205 0.72 -0.2 5,222,541 - ABID97_RS25205 0.72 +1.4 5,222,595 - ABID97_RS25205 0.79 -0.6 5,222,595 - ABID97_RS25205 0.79 +0.0 5,222,605 + ABID97_RS25205 0.80 -0.0 5,222,605 + ABID97_RS25205 0.80 +0.0 5,222,606 - ABID97_RS25205 0.80 -0.4 5,222,606 - ABID97_RS25205 0.80 +0.0 5,222,606 - ABID97_RS25205 0.80 +0.3 5,222,606 - ABID97_RS25205 0.80 +0.2 5,222,640 + ABID97_RS25205 0.84 -0.1 5,222,790 + +1.4 5,222,790 + -0.2 5,222,790 + -0.1 5,222,791 - +0.2 5,222,791 - +0.5 5,222,791 - +1.6 5,222,791 - +0.4 5,222,791 - -1.7 5,222,791 - -0.5 5,222,791 - +0.3 5,222,791 - +0.5 5,222,791 - -0.4 5,222,810 + -0.9 5,222,811 - -0.6 5,222,811 - -0.5 5,222,811 - -0.2 5,222,851 + -0.1 5,222,851 + +0.5 5,222,852 - -0.1 5,222,852 - +0.5 5,222,874 + +0.0 5,222,875 - +1.2
Or see this region's nucleotide sequence