Strain Fitness in Variovorax sp. OAS795 around ABID97_RS24015

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS24005 and ABID97_RS24010 are separated by 4 nucleotidesABID97_RS24010 and ABID97_RS24015 are separated by 104 nucleotidesABID97_RS24015 and ABID97_RS24020 overlap by 4 nucleotides ABID97_RS24005: ABID97_RS24005 - glutathione-regulated potassium-efflux system protein KefC, at 4,962,484 to 4,964,352 _RS24005 ABID97_RS24010: ABID97_RS24010 - amidohydrolase family protein, at 4,964,357 to 4,965,223 _RS24010 ABID97_RS24015: ABID97_RS24015 - crotonase/enoyl-CoA hydratase family protein, at 4,965,328 to 4,966,101 _RS24015 ABID97_RS24020: ABID97_RS24020 - feruloyl-CoA synthase, at 4,966,098 to 4,967,951 _RS24020 Position (kb) 4965 4966 4967Strain fitness (log2 ratio) -2 -1 0 1 2at 4964.520 kb on + strand, within ABID97_RS24010at 4964.521 kb on - strand, within ABID97_RS24010at 4964.521 kb on - strand, within ABID97_RS24010at 4964.544 kb on + strand, within ABID97_RS24010at 4964.799 kb on + strand, within ABID97_RS24010at 4964.800 kb on - strand, within ABID97_RS24010at 4964.800 kb on - strand, within ABID97_RS24010at 4964.800 kb on - strand, within ABID97_RS24010at 4964.800 kb on - strand, within ABID97_RS24010at 4964.823 kb on + strand, within ABID97_RS24010at 4965.069 kb on + strand, within ABID97_RS24010at 4965.070 kb on - strand, within ABID97_RS24010at 4965.115 kb on - strand, within ABID97_RS24010at 4965.115 kb on - strand, within ABID97_RS24010at 4965.115 kb on - strand, within ABID97_RS24010at 4965.136 kb on - strand, within ABID97_RS24010at 4965.147 kb on + strandat 4965.147 kb on + strandat 4965.148 kb on - strandat 4965.148 kb on - strandat 4965.244 kb on + strandat 4965.244 kb on + strandat 4965.707 kb on - strand, within ABID97_RS24015at 4965.707 kb on - strand, within ABID97_RS24015at 4965.820 kb on + strand, within ABID97_RS24015at 4965.821 kb on - strand, within ABID97_RS24015at 4965.821 kb on - strand, within ABID97_RS24015at 4965.859 kb on + strand, within ABID97_RS24015at 4965.859 kb on + strand, within ABID97_RS24015at 4965.859 kb on + strand, within ABID97_RS24015at 4965.860 kb on - strand, within ABID97_RS24015at 4965.940 kb on + strand, within ABID97_RS24015at 4965.940 kb on + strand, within ABID97_RS24015at 4965.941 kb on - strand, within ABID97_RS24015at 4966.956 kb on + strand, within ABID97_RS24020at 4966.957 kb on - strand, within ABID97_RS24020at 4966.957 kb on - strand, within ABID97_RS24020at 4967.034 kb on + strand, within ABID97_RS24020at 4967.034 kb on + strand, within ABID97_RS24020at 4967.035 kb on - strand, within ABID97_RS24020

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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4,964,520 + ABID97_RS24010 0.19 -0.9
4,964,521 - ABID97_RS24010 0.19 +0.1
4,964,521 - ABID97_RS24010 0.19 +0.3
4,964,544 + ABID97_RS24010 0.22 -0.1
4,964,799 + ABID97_RS24010 0.51 -0.5
4,964,800 - ABID97_RS24010 0.51 -0.3
4,964,800 - ABID97_RS24010 0.51 +0.8
4,964,800 - ABID97_RS24010 0.51 -0.6
4,964,800 - ABID97_RS24010 0.51 +0.2
4,964,823 + ABID97_RS24010 0.54 +1.9
4,965,069 + ABID97_RS24010 0.82 -0.0
4,965,070 - ABID97_RS24010 0.82 +0.1
4,965,115 - ABID97_RS24010 0.87 +0.8
4,965,115 - ABID97_RS24010 0.87 -0.6
4,965,115 - ABID97_RS24010 0.87 -0.7
4,965,136 - ABID97_RS24010 0.90 -0.2
4,965,147 + +0.1
4,965,147 + +0.1
4,965,148 - +0.3
4,965,148 - -0.2
4,965,244 + +0.4
4,965,244 + +0.7
4,965,707 - ABID97_RS24015 0.49 +0.7
4,965,707 - ABID97_RS24015 0.49 -1.0
4,965,820 + ABID97_RS24015 0.64 -0.0
4,965,821 - ABID97_RS24015 0.64 +0.5
4,965,821 - ABID97_RS24015 0.64 -0.6
4,965,859 + ABID97_RS24015 0.69 +0.1
4,965,859 + ABID97_RS24015 0.69 +2.0
4,965,859 + ABID97_RS24015 0.69 -0.0
4,965,860 - ABID97_RS24015 0.69 -0.0
4,965,940 + ABID97_RS24015 0.79 +0.7
4,965,940 + ABID97_RS24015 0.79 +0.1
4,965,941 - ABID97_RS24015 0.79 +1.0
4,966,956 + ABID97_RS24020 0.46 -2.1
4,966,957 - ABID97_RS24020 0.46 -0.3
4,966,957 - ABID97_RS24020 0.46 +0.0
4,967,034 + ABID97_RS24020 0.50 +0.6
4,967,034 + ABID97_RS24020 0.50 -0.2
4,967,035 - ABID97_RS24020 0.51 +0.4

Or see this region's nucleotide sequence