Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17355

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17350 and ABID97_RS17355 are separated by 40 nucleotidesABID97_RS17355 and ABID97_RS17360 are separated by 150 nucleotides ABID97_RS17350: ABID97_RS17350 - efflux RND transporter permease subunit, at 3,584,471 to 3,587,746 _RS17350 ABID97_RS17355: ABID97_RS17355 - efflux RND transporter periplasmic adaptor subunit, at 3,587,787 to 3,589,037 _RS17355 ABID97_RS17360: ABID97_RS17360 - alpha/beta hydrolase, at 3,589,188 to 3,590,069 _RS17360 Position (kb) 3587 3588 3589 3590Strain fitness (log2 ratio) -2 -1 0 1at 3587.271 kb on + strand, within ABID97_RS17350at 3587.271 kb on + strand, within ABID97_RS17350at 3587.283 kb on + strand, within ABID97_RS17350at 3587.284 kb on - strand, within ABID97_RS17350at 3587.284 kb on - strand, within ABID97_RS17350at 3587.511 kb on + strandat 3587.511 kb on + strandat 3587.511 kb on + strandat 3587.512 kb on - strandat 3587.512 kb on - strandat 3587.685 kb on - strandat 3587.685 kb on - strandat 3587.735 kb on - strandat 3587.989 kb on + strand, within ABID97_RS17355at 3588.352 kb on + strand, within ABID97_RS17355at 3588.475 kb on + strand, within ABID97_RS17355at 3588.565 kb on + strand, within ABID97_RS17355at 3588.566 kb on - strand, within ABID97_RS17355at 3588.691 kb on + strand, within ABID97_RS17355at 3589.190 kb on - strandat 3589.190 kb on - strandat 3589.190 kb on - strandat 3589.190 kb on - strandat 3589.699 kb on + strand, within ABID97_RS17360at 3589.742 kb on - strand, within ABID97_RS17360at 3589.952 kb on - strand, within ABID97_RS17360

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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3,587,271 + ABID97_RS17350 0.85 -1.9
3,587,271 + ABID97_RS17350 0.85 +0.1
3,587,283 + ABID97_RS17350 0.86 +0.9
3,587,284 - ABID97_RS17350 0.86 +0.0
3,587,284 - ABID97_RS17350 0.86 +0.7
3,587,511 + +0.0
3,587,511 + -0.3
3,587,511 + -0.1
3,587,512 - +0.1
3,587,512 - -0.4
3,587,685 - +0.4
3,587,685 - +0.4
3,587,735 - +0.2
3,587,989 + ABID97_RS17355 0.16 -0.4
3,588,352 + ABID97_RS17355 0.45 -0.0
3,588,475 + ABID97_RS17355 0.55 +0.7
3,588,565 + ABID97_RS17355 0.62 +0.6
3,588,566 - ABID97_RS17355 0.62 +0.6
3,588,691 + ABID97_RS17355 0.72 -0.4
3,589,190 - -0.3
3,589,190 - -0.9
3,589,190 - -0.3
3,589,190 - +1.2
3,589,699 + ABID97_RS17360 0.58 +1.1
3,589,742 - ABID97_RS17360 0.63 +0.7
3,589,952 - ABID97_RS17360 0.87 +0.1

Or see this region's nucleotide sequence