Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15315

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15305 and ABID97_RS15310 are separated by 10 nucleotidesABID97_RS15310 and ABID97_RS15315 overlap by 4 nucleotidesABID97_RS15315 and ABID97_RS15320 are separated by 54 nucleotidesABID97_RS15320 and ABID97_RS15325 overlap by 4 nucleotides ABID97_RS15305: ABID97_RS15305 - TonB-dependent siderophore receptor, at 3,165,994 to 3,168,150 _RS15305 ABID97_RS15310: ABID97_RS15310 - thiamine phosphate synthase, at 3,168,161 to 3,169,093 _RS15310 ABID97_RS15315: ABID97_RS15315 - thiazole synthase, at 3,169,090 to 3,169,893 _RS15315 ABID97_RS15320: ABID97_RS15320 - sulfur carrier protein ThiS, at 3,169,948 to 3,170,151 _RS15320 ABID97_RS15325: ABID97_RS15325 - FAD-dependent oxidoreductase, at 3,170,148 to 3,171,239 _RS15325 Position (kb) 3169 3170Strain fitness (log2 ratio) -1 0 1 2at 3168.424 kb on - strand, within ABID97_RS15310at 3168.424 kb on - strand, within ABID97_RS15310at 3168.969 kb on + strand, within ABID97_RS15310at 3169.065 kb on - strandat 3169.275 kb on - strand, within ABID97_RS15315at 3169.481 kb on + strand, within ABID97_RS15315at 3169.481 kb on + strand, within ABID97_RS15315at 3169.559 kb on + strand, within ABID97_RS15315at 3169.820 kb on + strandat 3169.933 kb on + strandat 3170.141 kb on + strandat 3170.500 kb on + strand, within ABID97_RS15325at 3170.501 kb on - strand, within ABID97_RS15325

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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3,168,424 - ABID97_RS15310 0.28 -0.6
3,168,424 - ABID97_RS15310 0.28 -0.7
3,168,969 + ABID97_RS15310 0.87 -0.5
3,169,065 - +0.1
3,169,275 - ABID97_RS15315 0.23 +0.4
3,169,481 + ABID97_RS15315 0.49 +0.0
3,169,481 + ABID97_RS15315 0.49 -0.7
3,169,559 + ABID97_RS15315 0.58 +0.2
3,169,820 + -0.4
3,169,933 + -0.3
3,170,141 + +2.7
3,170,500 + ABID97_RS15325 0.32 +0.0
3,170,501 - ABID97_RS15325 0.32 -0.8

Or see this region's nucleotide sequence