Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15215

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15205 and ABID97_RS15210 overlap by 17 nucleotidesABID97_RS15210 and ABID97_RS15215 overlap by 4 nucleotidesABID97_RS15215 and ABID97_RS15220 overlap by 8 nucleotidesABID97_RS15220 and ABID97_RS15225 overlap by 4 nucleotidesABID97_RS15225 and ABID97_RS15230 are separated by 4 nucleotidesABID97_RS15230 and ABID97_RS15235 overlap by 1 nucleotides ABID97_RS15205: ABID97_RS15205 - phage tail protein, at 3,149,718 to 3,150,230 _RS15205 ABID97_RS15210: ABID97_RS15210 - lysis system i-spanin subunit Rz, at 3,150,214 to 3,150,744 _RS15210 ABID97_RS15215: ABID97_RS15215 - lysozyme, at 3,150,741 to 3,151,316 _RS15215 ABID97_RS15220: ABID97_RS15220 - hypothetical protein, at 3,151,309 to 3,151,608 _RS15220 ABID97_RS15225: ABID97_RS15225 - hypothetical protein, at 3,151,605 to 3,152,018 _RS15225 ABID97_RS15230: ABID97_RS15230 - tail protein X, at 3,152,023 to 3,152,226 _RS15230 ABID97_RS15235: ABID97_RS15235 - head completion/stabilization protein, at 3,152,226 to 3,152,696 _RS15235 Position (kb) 3150 3151 3152Strain fitness (log2 ratio) -1 0 1at 3150.088 kb on + strand, within ABID97_RS15205at 3150.089 kb on - strand, within ABID97_RS15205at 3150.094 kb on + strand, within ABID97_RS15205at 3150.266 kb on + strandat 3150.266 kb on + strandat 3150.956 kb on - strand, within ABID97_RS15215at 3152.055 kb on + strand, within ABID97_RS15230

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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3,150,088 + ABID97_RS15205 0.72 -0.9
3,150,089 - ABID97_RS15205 0.72 +0.4
3,150,094 + ABID97_RS15205 0.73 -0.4
3,150,266 + -0.3
3,150,266 + -0.1
3,150,956 - ABID97_RS15215 0.37 -0.2
3,152,055 + ABID97_RS15230 0.16 -0.6

Or see this region's nucleotide sequence