Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11700

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11695 and ABID97_RS11700 are separated by 180 nucleotidesABID97_RS11700 and ABID97_RS11705 are separated by 210 nucleotides ABID97_RS11695: ABID97_RS11695 - IS481 family transposase, at 2,418,881 to 2,419,831 _RS11695 ABID97_RS11700: ABID97_RS11700 - GntR family transcriptional regulator, at 2,420,012 to 2,420,800 _RS11700 ABID97_RS11705: ABID97_RS11705 - hypothetical protein, at 2,421,011 to 2,421,292 _RS11705 Position (kb) 2420 2421Strain fitness (log2 ratio) -1 0 1at 2419.931 kb on + strandat 2420.318 kb on + strand, within ABID97_RS11700at 2420.331 kb on - strand, within ABID97_RS11700at 2420.583 kb on - strand, within ABID97_RS11700at 2420.583 kb on - strand, within ABID97_RS11700at 2420.780 kb on + strandat 2420.871 kb on + strandat 2420.938 kb on - strandat 2420.982 kb on - strandat 2421.401 kb on + strandat 2421.523 kb on + strandat 2421.734 kb on - strandat 2421.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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2,419,931 + -0.1
2,420,318 + ABID97_RS11700 0.39 -0.2
2,420,331 - ABID97_RS11700 0.40 -0.9
2,420,583 - ABID97_RS11700 0.72 -0.4
2,420,583 - ABID97_RS11700 0.72 -0.2
2,420,780 + -0.9
2,420,871 + -0.1
2,420,938 - +0.4
2,420,982 - +0.2
2,421,401 + -0.4
2,421,523 + +0.9
2,421,734 - -0.9
2,421,734 - -0.1

Or see this region's nucleotide sequence