Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09445

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09430 and ABID97_RS09435 overlap by 4 nucleotidesABID97_RS09435 and ABID97_RS09440 overlap by 4 nucleotidesABID97_RS09440 and ABID97_RS09445 overlap by 4 nucleotidesABID97_RS09445 and ABID97_RS09450 overlap by 4 nucleotidesABID97_RS09450 and ABID97_RS09455 overlap by 1 nucleotides ABID97_RS09430: ABID97_RS09430 - monovalent cation/H(+) antiporter subunit G, at 1,982,271 to 1,982,630 _RS09430 ABID97_RS09435: ABID97_RS09435 - K+/H+ antiporter subunit F, at 1,982,627 to 1,982,905 _RS09435 ABID97_RS09440: ABID97_RS09440 - Na+/H+ antiporter subunit E, at 1,982,902 to 1,983,393 _RS09440 ABID97_RS09445: ABID97_RS09445 - monovalent cation/H+ antiporter subunit D, at 1,983,390 to 1,985,096 _RS09445 ABID97_RS09450: ABID97_RS09450 - Na+/H+ antiporter subunit C, at 1,985,093 to 1,985,446 _RS09450 ABID97_RS09455: ABID97_RS09455 - monovalent cation/H+ antiporter subunit A, at 1,985,446 to 1,988,388 _RS09455 Position (kb) 1983 1984 1985 1986Strain fitness (log2 ratio) -2 -1 0 1at 1982.434 kb on + strand, within ABID97_RS09430at 1982.574 kb on + strand, within ABID97_RS09430at 1982.734 kb on - strand, within ABID97_RS09435at 1982.775 kb on + strand, within ABID97_RS09435at 1982.775 kb on + strand, within ABID97_RS09435at 1984.033 kb on + strand, within ABID97_RS09445at 1984.033 kb on + strand, within ABID97_RS09445at 1984.033 kb on + strand, within ABID97_RS09445at 1984.034 kb on - strand, within ABID97_RS09445at 1984.034 kb on - strand, within ABID97_RS09445at 1984.036 kb on + strand, within ABID97_RS09445at 1984.037 kb on - strand, within ABID97_RS09445at 1984.037 kb on - strand, within ABID97_RS09445at 1984.271 kb on - strand, within ABID97_RS09445at 1984.271 kb on - strand, within ABID97_RS09445at 1984.330 kb on + strand, within ABID97_RS09445at 1984.331 kb on - strand, within ABID97_RS09445at 1984.493 kb on - strand, within ABID97_RS09445at 1984.549 kb on + strand, within ABID97_RS09445at 1984.549 kb on + strand, within ABID97_RS09445at 1984.550 kb on - strand, within ABID97_RS09445at 1984.603 kb on + strand, within ABID97_RS09445at 1984.853 kb on - strand, within ABID97_RS09445at 1985.394 kb on + strand, within ABID97_RS09450at 1985.873 kb on + strand, within ABID97_RS09455at 1985.874 kb on - strand, within ABID97_RS09455at 1985.874 kb on - strand, within ABID97_RS09455at 1985.874 kb on - strand, within ABID97_RS09455at 1985.874 kb on - strand, within ABID97_RS09455at 1986.065 kb on + strand, within ABID97_RS09455at 1986.065 kb on + strand, within ABID97_RS09455at 1986.065 kb on + strand, within ABID97_RS09455at 1986.065 kb on + strand, within ABID97_RS09455at 1986.066 kb on - strand, within ABID97_RS09455

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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1,982,434 + ABID97_RS09430 0.45 -1.4
1,982,574 + ABID97_RS09430 0.84 +1.3
1,982,734 - ABID97_RS09435 0.38 +0.1
1,982,775 + ABID97_RS09435 0.53 -0.3
1,982,775 + ABID97_RS09435 0.53 +0.2
1,984,033 + ABID97_RS09445 0.38 -0.4
1,984,033 + ABID97_RS09445 0.38 +0.1
1,984,033 + ABID97_RS09445 0.38 -0.2
1,984,034 - ABID97_RS09445 0.38 +0.3
1,984,034 - ABID97_RS09445 0.38 -0.4
1,984,036 + ABID97_RS09445 0.38 -1.9
1,984,037 - ABID97_RS09445 0.38 -0.0
1,984,037 - ABID97_RS09445 0.38 -0.4
1,984,271 - ABID97_RS09445 0.52 -0.1
1,984,271 - ABID97_RS09445 0.52 +0.7
1,984,330 + ABID97_RS09445 0.55 -0.2
1,984,331 - ABID97_RS09445 0.55 -0.4
1,984,493 - ABID97_RS09445 0.65 +0.1
1,984,549 + ABID97_RS09445 0.68 -0.1
1,984,549 + ABID97_RS09445 0.68 +0.4
1,984,550 - ABID97_RS09445 0.68 +0.3
1,984,603 + ABID97_RS09445 0.71 +0.8
1,984,853 - ABID97_RS09445 0.86 -0.6
1,985,394 + ABID97_RS09450 0.85 +0.4
1,985,873 + ABID97_RS09455 0.15 +0.5
1,985,874 - ABID97_RS09455 0.15 -0.1
1,985,874 - ABID97_RS09455 0.15 +0.1
1,985,874 - ABID97_RS09455 0.15 +0.0
1,985,874 - ABID97_RS09455 0.15 +0.0
1,986,065 + ABID97_RS09455 0.21 -0.0
1,986,065 + ABID97_RS09455 0.21 +0.0
1,986,065 + ABID97_RS09455 0.21 -0.2
1,986,065 + ABID97_RS09455 0.21 +0.2
1,986,066 - ABID97_RS09455 0.21 +0.8

Or see this region's nucleotide sequence