Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08710

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08700 and ABID97_RS08705 are separated by 132 nucleotidesABID97_RS08705 and ABID97_RS08710 are separated by 18 nucleotidesABID97_RS08710 and ABID97_RS08715 overlap by 4 nucleotidesABID97_RS08715 and ABID97_RS08720 are separated by 114 nucleotides ABID97_RS08700: ABID97_RS08700 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,824,736 to 1,825,776 _RS08700 ABID97_RS08705: ABID97_RS08705 - DnaA regulatory inactivator Hda, at 1,825,909 to 1,826,595 _RS08705 ABID97_RS08710: ABID97_RS08710 - polynucleotide adenylyltransferase PcnB, at 1,826,614 to 1,828,254 _RS08710 ABID97_RS08715: ABID97_RS08715 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,828,251 to 1,828,907 _RS08715 ABID97_RS08720: ABID97_RS08720 - DUF47 domain-containing protein, at 1,829,022 to 1,829,666 _RS08720 Position (kb) 1826 1827 1828 1829Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1825.745 kb on + strandat 1825.871 kb on + strandat 1825.871 kb on + strandat 1826.593 kb on + strandat 1826.593 kb on + strandat 1826.594 kb on - strandat 1826.594 kb on - strandat 1826.791 kb on + strand, within ABID97_RS08710at 1826.791 kb on + strand, within ABID97_RS08710at 1826.791 kb on + strand, within ABID97_RS08710at 1826.791 kb on + strand, within ABID97_RS08710at 1826.791 kb on + strand, within ABID97_RS08710at 1826.792 kb on - strand, within ABID97_RS08710at 1826.992 kb on + strand, within ABID97_RS08710at 1826.992 kb on + strand, within ABID97_RS08710at 1826.992 kb on + strand, within ABID97_RS08710at 1826.992 kb on + strand, within ABID97_RS08710at 1827.163 kb on + strand, within ABID97_RS08710at 1827.163 kb on + strand, within ABID97_RS08710at 1827.163 kb on + strand, within ABID97_RS08710at 1827.163 kb on + strand, within ABID97_RS08710at 1827.163 kb on + strand, within ABID97_RS08710at 1827.164 kb on - strand, within ABID97_RS08710at 1827.164 kb on - strand, within ABID97_RS08710at 1827.164 kb on - strand, within ABID97_RS08710at 1827.164 kb on - strand, within ABID97_RS08710at 1827.164 kb on - strand, within ABID97_RS08710at 1827.164 kb on - strand, within ABID97_RS08710at 1827.166 kb on + strand, within ABID97_RS08710at 1827.167 kb on - strand, within ABID97_RS08710at 1827.196 kb on + strand, within ABID97_RS08710at 1827.493 kb on + strand, within ABID97_RS08710at 1827.494 kb on - strand, within ABID97_RS08710at 1827.494 kb on - strand, within ABID97_RS08710at 1827.832 kb on + strand, within ABID97_RS08710at 1828.957 kb on - strandat 1829.130 kb on + strand, within ABID97_RS08720at 1829.130 kb on + strand, within ABID97_RS08720at 1829.130 kb on + strand, within ABID97_RS08720at 1829.130 kb on + strand, within ABID97_RS08720at 1829.131 kb on - strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.157 kb on + strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720at 1829.158 kb on - strand, within ABID97_RS08720

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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1,825,745 + +1.4
1,825,871 + +1.2
1,825,871 + +0.3
1,826,593 + -0.4
1,826,593 + -1.6
1,826,594 - +0.8
1,826,594 - -0.2
1,826,791 + ABID97_RS08710 0.11 +0.1
1,826,791 + ABID97_RS08710 0.11 +1.8
1,826,791 + ABID97_RS08710 0.11 -2.8
1,826,791 + ABID97_RS08710 0.11 -1.3
1,826,791 + ABID97_RS08710 0.11 -0.2
1,826,792 - ABID97_RS08710 0.11 -0.7
1,826,992 + ABID97_RS08710 0.23 +0.2
1,826,992 + ABID97_RS08710 0.23 -1.2
1,826,992 + ABID97_RS08710 0.23 -1.0
1,826,992 + ABID97_RS08710 0.23 -0.7
1,827,163 + ABID97_RS08710 0.33 +1.8
1,827,163 + ABID97_RS08710 0.33 -0.5
1,827,163 + ABID97_RS08710 0.33 -2.0
1,827,163 + ABID97_RS08710 0.33 +0.2
1,827,163 + ABID97_RS08710 0.33 -0.6
1,827,164 - ABID97_RS08710 0.34 -0.5
1,827,164 - ABID97_RS08710 0.34 -1.1
1,827,164 - ABID97_RS08710 0.34 -0.0
1,827,164 - ABID97_RS08710 0.34 -0.2
1,827,164 - ABID97_RS08710 0.34 -0.8
1,827,164 - ABID97_RS08710 0.34 -0.3
1,827,166 + ABID97_RS08710 0.34 -0.8
1,827,167 - ABID97_RS08710 0.34 -2.4
1,827,196 + ABID97_RS08710 0.35 -0.5
1,827,493 + ABID97_RS08710 0.54 -0.8
1,827,494 - ABID97_RS08710 0.54 -1.3
1,827,494 - ABID97_RS08710 0.54 -1.6
1,827,832 + ABID97_RS08710 0.74 -1.2
1,828,957 - +0.2
1,829,130 + ABID97_RS08720 0.17 +0.3
1,829,130 + ABID97_RS08720 0.17 -0.7
1,829,130 + ABID97_RS08720 0.17 -0.4
1,829,130 + ABID97_RS08720 0.17 +1.4
1,829,131 - ABID97_RS08720 0.17 -0.6
1,829,157 + ABID97_RS08720 0.21 -0.3
1,829,157 + ABID97_RS08720 0.21 -0.2
1,829,157 + ABID97_RS08720 0.21 -0.4
1,829,157 + ABID97_RS08720 0.21 -0.1
1,829,158 - ABID97_RS08720 0.21 -0.5
1,829,158 - ABID97_RS08720 0.21 +0.1
1,829,158 - ABID97_RS08720 0.21 -0.6
1,829,158 - ABID97_RS08720 0.21 +0.0
1,829,158 - ABID97_RS08720 0.21 +0.5

Or see this region's nucleotide sequence