Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04665 and ABID97_RS04670 are separated by 4 nucleotides ABID97_RS04670 and ABID97_RS04675 overlap by 1 nucleotides ABID97_RS04675 and ABID97_RS04680 are separated by 130 nucleotides ABID97_RS04680 and ABID97_RS04685 are separated by 84 nucleotides
ABID97_RS04665: ABID97_RS04665 - acyl-CoA dehydrogenase family protein, at 972,847 to 974,010
_RS04665
ABID97_RS04670: ABID97_RS04670 - enoyl-CoA hydratase-related protein, at 974,015 to 974,818
_RS04670
ABID97_RS04675: ABID97_RS04675 - acetyl-CoA C-acetyltransferase, at 974,818 to 975,996
_RS04675
ABID97_RS04680: ABID97_RS04680 - DUF2917 domain-containing protein, at 976,127 to 976,450
_RS04680
ABID97_RS04685: ABID97_RS04685 - LysR substrate-binding domain-containing protein, at 976,535 to 977,470
_RS04685
Position (kb) 974
975
976 Strain fitness (log2 ratio) -1
0
1 at 974.116 kb on - strand, within ABID97_RS04670 at 974.410 kb on - strand, within ABID97_RS04670 at 974.415 kb on + strand, within ABID97_RS04670 at 974.416 kb on - strand, within ABID97_RS04670 at 974.882 kb on + strand at 975.059 kb on + strand, within ABID97_RS04675 at 975.470 kb on + strand, within ABID97_RS04675 at 975.471 kb on - strand, within ABID97_RS04675 at 975.500 kb on + strand, within ABID97_RS04675 at 975.500 kb on + strand, within ABID97_RS04675 at 975.501 kb on - strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.581 kb on + strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.582 kb on - strand, within ABID97_RS04675 at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.983 kb on + strand at 975.984 kb on - strand at 975.984 kb on - strand at 975.984 kb on - strand at 975.984 kb on - strand at 976.476 kb on + strand at 976.487 kb on - strand at 976.487 kb on - strand at 976.488 kb on + strand at 976.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 974,116 - ABID97_RS04670 0.13 -0.7 974,410 - ABID97_RS04670 0.49 +0.3 974,415 + ABID97_RS04670 0.50 -0.3 974,416 - ABID97_RS04670 0.50 -0.4 974,882 + -0.0 975,059 + ABID97_RS04675 0.20 -0.0 975,470 + ABID97_RS04675 0.55 +0.5 975,471 - ABID97_RS04675 0.55 +1.1 975,500 + ABID97_RS04675 0.58 +0.5 975,500 + ABID97_RS04675 0.58 +0.6 975,501 - ABID97_RS04675 0.58 +1.4 975,581 + ABID97_RS04675 0.65 -1.0 975,581 + ABID97_RS04675 0.65 +0.7 975,581 + ABID97_RS04675 0.65 +0.1 975,581 + ABID97_RS04675 0.65 +0.7 975,582 - ABID97_RS04675 0.65 +0.1 975,582 - ABID97_RS04675 0.65 -0.3 975,582 - ABID97_RS04675 0.65 -1.3 975,582 - ABID97_RS04675 0.65 +0.1 975,582 - ABID97_RS04675 0.65 -0.1 975,983 + +0.1 975,983 + -0.4 975,983 + -0.7 975,983 + +0.1 975,983 + +0.3 975,983 + +0.0 975,983 + +0.0 975,983 + +0.1 975,984 - +0.1 975,984 - -0.1 975,984 - -0.3 975,984 - -0.2 976,476 + -0.1 976,487 - +0.6 976,487 - -0.5 976,488 + +1.2 976,508 + +0.5
Or see this region's nucleotide sequence