Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03950 and ABID97_RS03955 are separated by 133 nucleotides ABID97_RS03955 and ABID97_RS03960 are separated by 28 nucleotides
ABID97_RS03950: ABID97_RS03950 - penicillin-binding protein 2, at 809,004 to 810,971
_RS03950
ABID97_RS03955: ABID97_RS03955 - fumarylacetoacetase, at 811,105 to 812,373
_RS03955
ABID97_RS03960: ABID97_RS03960 - homogentisate 1,2-dioxygenase, at 812,402 to 813,727
_RS03960
Position (kb) 811
812
813 Strain fitness (log2 ratio) -2
-1
0
1
2 at 810.849 kb on + strand at 811.066 kb on - strand at 811.383 kb on - strand, within ABID97_RS03955 at 811.517 kb on + strand, within ABID97_RS03955 at 811.649 kb on + strand, within ABID97_RS03955 at 811.649 kb on + strand, within ABID97_RS03955 at 811.650 kb on - strand, within ABID97_RS03955 at 811.788 kb on - strand, within ABID97_RS03955 at 811.925 kb on + strand, within ABID97_RS03955 at 811.925 kb on + strand, within ABID97_RS03955 at 811.925 kb on + strand, within ABID97_RS03955 at 811.925 kb on + strand, within ABID97_RS03955 at 811.925 kb on + strand, within ABID97_RS03955 at 811.926 kb on - strand, within ABID97_RS03955 at 811.926 kb on - strand, within ABID97_RS03955 at 811.926 kb on - strand, within ABID97_RS03955 at 811.926 kb on - strand, within ABID97_RS03955 at 811.994 kb on + strand, within ABID97_RS03955 at 811.995 kb on - strand, within ABID97_RS03955 at 811.995 kb on - strand, within ABID97_RS03955 at 812.006 kb on + strand, within ABID97_RS03955 at 812.006 kb on + strand, within ABID97_RS03955 at 812.007 kb on - strand, within ABID97_RS03955 at 812.336 kb on - strand at 812.336 kb on - strand at 812.387 kb on + strand at 812.387 kb on + strand at 812.387 kb on + strand at 812.387 kb on + strand at 812.388 kb on - strand at 812.388 kb on - strand at 812.877 kb on + strand, within ABID97_RS03960 at 812.979 kb on + strand, within ABID97_RS03960 at 812.979 kb on + strand, within ABID97_RS03960 at 812.979 kb on + strand, within ABID97_RS03960 at 812.980 kb on - strand, within ABID97_RS03960 at 813.090 kb on + strand, within ABID97_RS03960 at 813.090 kb on + strand, within ABID97_RS03960 at 813.312 kb on + strand, within ABID97_RS03960
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 810,849 + +2.7 811,066 - +0.1 811,383 - ABID97_RS03955 0.22 -0.2 811,517 + ABID97_RS03955 0.32 +0.5 811,649 + ABID97_RS03955 0.43 -0.7 811,649 + ABID97_RS03955 0.43 -0.7 811,650 - ABID97_RS03955 0.43 +2.0 811,788 - ABID97_RS03955 0.54 -1.0 811,925 + ABID97_RS03955 0.65 +0.2 811,925 + ABID97_RS03955 0.65 +0.1 811,925 + ABID97_RS03955 0.65 -0.0 811,925 + ABID97_RS03955 0.65 -0.5 811,925 + ABID97_RS03955 0.65 -0.2 811,926 - ABID97_RS03955 0.65 -0.4 811,926 - ABID97_RS03955 0.65 +0.1 811,926 - ABID97_RS03955 0.65 -0.7 811,926 - ABID97_RS03955 0.65 -0.6 811,994 + ABID97_RS03955 0.70 +0.1 811,995 - ABID97_RS03955 0.70 +0.4 811,995 - ABID97_RS03955 0.70 -0.1 812,006 + ABID97_RS03955 0.71 -0.9 812,006 + ABID97_RS03955 0.71 -0.1 812,007 - ABID97_RS03955 0.71 -0.7 812,336 - +1.3 812,336 - +0.1 812,387 + +0.4 812,387 + +1.0 812,387 + -0.2 812,387 + +0.1 812,388 - -0.2 812,388 - +0.4 812,877 + ABID97_RS03960 0.36 +0.3 812,979 + ABID97_RS03960 0.44 -0.3 812,979 + ABID97_RS03960 0.44 -0.4 812,979 + ABID97_RS03960 0.44 +0.7 812,980 - ABID97_RS03960 0.44 -0.2 813,090 + ABID97_RS03960 0.52 -2.5 813,090 + ABID97_RS03960 0.52 +0.6 813,312 + ABID97_RS03960 0.69 +0.0
Or see this region's nucleotide sequence