Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03040 and ABID97_RS03045 are separated by 143 nucleotides ABID97_RS03045 and ABID97_RS03050 are separated by 16 nucleotides ABID97_RS03050 and ABID97_RS03055 are separated by 28 nucleotides ABID97_RS03055 and ABID97_RS03060 are separated by 105 nucleotides
ABID97_RS03040: ABID97_RS03040 - 3-keto-5-aminohexanoate cleavage protein, at 616,710 to 617,633
_RS03040
ABID97_RS03045: ABID97_RS03045 - Crp/Fnr family transcriptional regulator, at 617,777 to 618,484
_RS03045
ABID97_RS03050: ABID97_RS03050 - 4-oxalocrotonate tautomerase family protein, at 618,501 to 618,725
_RS03050
ABID97_RS03055: ABID97_RS03055 - SDR family oxidoreductase, at 618,754 to 619,500
_RS03055
ABID97_RS03060: ABID97_RS03060 - LysR substrate-binding domain-containing protein, at 619,606 to 620,517
_RS03060
Position (kb) 618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 617.674 kb on + strand at 617.675 kb on - strand at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.432 kb on - strand at 618.432 kb on - strand at 618.432 kb on - strand at 618.827 kb on + strand at 618.827 kb on + strand at 618.828 kb on - strand at 618.914 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.194 kb on - strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.538 kb on + strand at 619.538 kb on + strand at 619.539 kb on - strand at 619.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 617,674 + +0.5 617,675 - -0.1 618,230 + ABID97_RS03045 0.64 +2.4 618,230 + ABID97_RS03045 0.64 +0.0 618,230 + ABID97_RS03045 0.64 -1.4 618,230 + ABID97_RS03045 0.64 +0.1 618,230 + ABID97_RS03045 0.64 -1.1 618,231 - ABID97_RS03045 0.64 +0.6 618,231 - ABID97_RS03045 0.64 -0.5 618,231 - ABID97_RS03045 0.64 -0.0 618,432 - -0.2 618,432 - +0.3 618,432 - +2.0 618,827 + -0.3 618,827 + -0.2 618,828 - +0.1 618,914 + ABID97_RS03055 0.21 -1.0 619,139 + ABID97_RS03055 0.52 -0.1 619,139 + ABID97_RS03055 0.52 -1.8 619,194 - ABID97_RS03055 0.59 +0.0 619,418 + ABID97_RS03055 0.89 -0.7 619,418 + ABID97_RS03055 0.89 +1.0 619,419 - ABID97_RS03055 0.89 -0.9 619,419 - ABID97_RS03055 0.89 +0.5 619,538 + -0.2 619,538 + +1.0 619,539 - +0.1 619,568 - -0.2
Or see this region's nucleotide sequence