Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01265 and ABID97_RS01270 are separated by 182 nucleotides ABID97_RS01270 and ABID97_RS01275 are separated by 51 nucleotides
ABID97_RS01265: ABID97_RS01265 - MFS transporter, at 258,472 to 259,824
_RS01265
ABID97_RS01270: ABID97_RS01270 - ABC transporter substrate-binding protein, at 260,007 to 261,137
_RS01270
ABID97_RS01275: ABID97_RS01275 - tripartite tricarboxylate transporter substrate binding protein, at 261,189 to 262,127
_RS01275
Position (kb) 260
261
262 Strain fitness (log2 ratio) -1
0
1 at 259.330 kb on + strand, within ABID97_RS01265 at 259.330 kb on + strand, within ABID97_RS01265 at 259.330 kb on + strand, within ABID97_RS01265 at 259.330 kb on + strand, within ABID97_RS01265 at 259.331 kb on - strand, within ABID97_RS01265 at 259.331 kb on - strand, within ABID97_RS01265 at 259.331 kb on - strand, within ABID97_RS01265 at 259.343 kb on - strand, within ABID97_RS01265 at 259.343 kb on - strand, within ABID97_RS01265 at 259.343 kb on - strand, within ABID97_RS01265 at 259.352 kb on - strand, within ABID97_RS01265 at 259.369 kb on + strand, within ABID97_RS01265 at 259.369 kb on + strand, within ABID97_RS01265 at 259.480 kb on + strand, within ABID97_RS01265 at 259.481 kb on - strand, within ABID97_RS01265 at 259.481 kb on - strand, within ABID97_RS01265 at 259.693 kb on + strand at 259.693 kb on + strand at 259.694 kb on - strand at 259.694 kb on - strand at 259.694 kb on - strand at 259.694 kb on - strand at 259.694 kb on - strand at 260.215 kb on + strand, within ABID97_RS01270 at 260.216 kb on - strand, within ABID97_RS01270 at 260.299 kb on + strand, within ABID97_RS01270 at 260.310 kb on + strand, within ABID97_RS01270 at 260.412 kb on - strand, within ABID97_RS01270 at 260.418 kb on + strand, within ABID97_RS01270 at 260.424 kb on + strand, within ABID97_RS01270 at 261.251 kb on + strand at 261.252 kb on - strand at 261.252 kb on - strand at 261.470 kb on - strand, within ABID97_RS01275 at 261.470 kb on - strand, within ABID97_RS01275 at 261.613 kb on + strand, within ABID97_RS01275 at 261.613 kb on + strand, within ABID97_RS01275 at 261.614 kb on - strand, within ABID97_RS01275 at 261.700 kb on + strand, within ABID97_RS01275 at 261.700 kb on + strand, within ABID97_RS01275 at 261.758 kb on - strand, within ABID97_RS01275 at 261.791 kb on - strand, within ABID97_RS01275 at 261.866 kb on - strand, within ABID97_RS01275
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 259,330 + ABID97_RS01265 0.63 +0.4 259,330 + ABID97_RS01265 0.63 -0.7 259,330 + ABID97_RS01265 0.63 +0.1 259,330 + ABID97_RS01265 0.63 +1.1 259,331 - ABID97_RS01265 0.63 +0.0 259,331 - ABID97_RS01265 0.63 +0.4 259,331 - ABID97_RS01265 0.63 -0.4 259,343 - ABID97_RS01265 0.64 -0.4 259,343 - ABID97_RS01265 0.64 -0.1 259,343 - ABID97_RS01265 0.64 -1.3 259,352 - ABID97_RS01265 0.65 -0.5 259,369 + ABID97_RS01265 0.66 +0.1 259,369 + ABID97_RS01265 0.66 -0.9 259,480 + ABID97_RS01265 0.75 +0.4 259,481 - ABID97_RS01265 0.75 -0.4 259,481 - ABID97_RS01265 0.75 +0.1 259,693 + +0.1 259,693 + +0.5 259,694 - -0.0 259,694 - -0.5 259,694 - +0.9 259,694 - -0.2 259,694 - -0.1 260,215 + ABID97_RS01270 0.18 -0.7 260,216 - ABID97_RS01270 0.18 -0.1 260,299 + ABID97_RS01270 0.26 -1.3 260,310 + ABID97_RS01270 0.27 -0.4 260,412 - ABID97_RS01270 0.36 +0.0 260,418 + ABID97_RS01270 0.36 -1.7 260,424 + ABID97_RS01270 0.37 +0.4 261,251 + +0.1 261,252 - -0.0 261,252 - +0.8 261,470 - ABID97_RS01275 0.30 +0.0 261,470 - ABID97_RS01275 0.30 -0.4 261,613 + ABID97_RS01275 0.45 -0.2 261,613 + ABID97_RS01275 0.45 +0.5 261,614 - ABID97_RS01275 0.45 -0.7 261,700 + ABID97_RS01275 0.54 +0.2 261,700 + ABID97_RS01275 0.54 -0.4 261,758 - ABID97_RS01275 0.61 +0.0 261,791 - ABID97_RS01275 0.64 +0.0 261,866 - ABID97_RS01275 0.72 +0.9
Or see this region's nucleotide sequence