Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01020 and ABID97_RS01025 are separated by 11 nucleotides ABID97_RS01025 and ABID97_RS01030 are separated by 1 nucleotides ABID97_RS01030 and ABID97_RS01035 are separated by 286 nucleotides
ABID97_RS01020: ABID97_RS01020 - potassium-transporting ATPase subunit KdpB, at 206,516 to 208,606
_RS01020
ABID97_RS01025: ABID97_RS01025 - potassium-transporting ATPase subunit KdpA, at 208,618 to 210,342
_RS01025
ABID97_RS01030: ABID97_RS01030 - K(+)-transporting ATPase subunit F, at 210,344 to 210,442
_RS01030
ABID97_RS01035: ABID97_RS01035 - metalloregulator ArsR/SmtB family transcription factor, at 210,729 to 211,400
_RS01035
Position (kb) 208
209
210
211 Strain fitness (log2 ratio) -1
0
1
2 at 208.482 kb on + strand at 208.673 kb on + strand at 208.673 kb on + strand at 208.674 kb on - strand at 208.674 kb on - strand at 208.674 kb on - strand at 209.160 kb on - strand, within ABID97_RS01025 at 209.726 kb on + strand, within ABID97_RS01025 at 209.963 kb on + strand, within ABID97_RS01025 at 209.964 kb on - strand, within ABID97_RS01025 at 209.964 kb on - strand, within ABID97_RS01025 at 209.988 kb on - strand, within ABID97_RS01025 at 210.633 kb on + strand at 211.104 kb on + strand, within ABID97_RS01035 at 211.104 kb on + strand, within ABID97_RS01035 at 211.104 kb on + strand, within ABID97_RS01035 at 211.105 kb on - strand, within ABID97_RS01035 at 211.105 kb on - strand, within ABID97_RS01035
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 208,482 + +0.5 208,673 + +0.3 208,673 + +0.4 208,674 - -0.4 208,674 - -0.3 208,674 - +1.0 209,160 - ABID97_RS01025 0.31 -0.3 209,726 + ABID97_RS01025 0.64 -0.0 209,963 + ABID97_RS01025 0.78 -1.3 209,964 - ABID97_RS01025 0.78 -0.6 209,964 - ABID97_RS01025 0.78 +0.4 209,988 - ABID97_RS01025 0.79 -0.3 210,633 + +0.0 211,104 + ABID97_RS01035 0.56 -0.3 211,104 + ABID97_RS01035 0.56 -0.1 211,104 + ABID97_RS01035 0.56 +0.9 211,105 - ABID97_RS01035 0.56 +2.5 211,105 - ABID97_RS01035 0.56 +0.2
Or see this region's nucleotide sequence