Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00410 and ABID97_RS00415 overlap by 4 nucleotides ABID97_RS00415 and ABID97_RS00420 are separated by 180 nucleotides ABID97_RS00420 and ABID97_RS00425 are separated by 72 nucleotides
ABID97_RS00410: ABID97_RS00410 - hypothetical protein, at 92,734 to 93,153
_RS00410
ABID97_RS00415: ABID97_RS00415 - hypothetical protein, at 93,150 to 93,743
_RS00415
ABID97_RS00420: ABID97_RS00420 - Gfo/Idh/MocA family oxidoreductase, at 93,924 to 95,087
_RS00420
ABID97_RS00425: ABID97_RS00425 - substrate-binding domain-containing protein, at 95,160 to 96,122
_RS00425
Position (kb) 93
94
95
96 Strain fitness (log2 ratio) -1
0
1
2 at 93.235 kb on + strand, within ABID97_RS00415 at 93.236 kb on - strand, within ABID97_RS00415 at 93.267 kb on - strand, within ABID97_RS00415 at 93.316 kb on + strand, within ABID97_RS00415 at 93.317 kb on - strand, within ABID97_RS00415 at 93.610 kb on + strand, within ABID97_RS00415 at 93.611 kb on - strand, within ABID97_RS00415 at 93.880 kb on + strand at 93.880 kb on + strand at 93.880 kb on + strand at 93.880 kb on + strand at 93.880 kb on + strand at 93.880 kb on + strand at 93.881 kb on - strand at 93.881 kb on - strand at 93.881 kb on - strand at 93.881 kb on - strand at 93.881 kb on - strand at 93.881 kb on - strand at 93.881 kb on - strand at 93.881 kb on - strand at 94.084 kb on + strand, within ABID97_RS00420 at 94.084 kb on + strand, within ABID97_RS00420 at 94.576 kb on + strand, within ABID97_RS00420 at 94.576 kb on + strand, within ABID97_RS00420 at 94.576 kb on + strand, within ABID97_RS00420 at 94.577 kb on - strand, within ABID97_RS00420 at 94.660 kb on + strand, within ABID97_RS00420 at 94.661 kb on - strand, within ABID97_RS00420 at 94.661 kb on - strand, within ABID97_RS00420 at 94.666 kb on + strand, within ABID97_RS00420 at 94.666 kb on + strand, within ABID97_RS00420 at 94.666 kb on + strand, within ABID97_RS00420 at 94.666 kb on + strand, within ABID97_RS00420 at 94.667 kb on - strand, within ABID97_RS00420 at 94.667 kb on - strand, within ABID97_RS00420 at 94.667 kb on - strand, within ABID97_RS00420 at 94.667 kb on - strand, within ABID97_RS00420 at 95.182 kb on + strand at 95.182 kb on + strand at 95.183 kb on - strand at 95.291 kb on - strand, within ABID97_RS00425 at 95.291 kb on - strand, within ABID97_RS00425 at 95.291 kb on - strand, within ABID97_RS00425 at 95.291 kb on - strand, within ABID97_RS00425 at 95.308 kb on + strand, within ABID97_RS00425 at 95.497 kb on + strand, within ABID97_RS00425 at 95.543 kb on - strand, within ABID97_RS00425 at 95.543 kb on - strand, within ABID97_RS00425 at 95.543 kb on - strand, within ABID97_RS00425 at 95.680 kb on + strand, within ABID97_RS00425 at 95.680 kb on + strand, within ABID97_RS00425 at 95.681 kb on - strand, within ABID97_RS00425 at 95.725 kb on + strand, within ABID97_RS00425 at 95.725 kb on + strand, within ABID97_RS00425 at 95.725 kb on + strand, within ABID97_RS00425 at 95.726 kb on - strand, within ABID97_RS00425 at 95.726 kb on - strand, within ABID97_RS00425 at 95.776 kb on + strand, within ABID97_RS00425 at 95.980 kb on + strand, within ABID97_RS00425 at 95.980 kb on + strand, within ABID97_RS00425 at 95.980 kb on + strand, within ABID97_RS00425 at 95.981 kb on - strand, within ABID97_RS00425 at 95.981 kb on - strand, within ABID97_RS00425
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 93,235 + ABID97_RS00415 0.14 -0.6 93,236 - ABID97_RS00415 0.14 -0.3 93,267 - ABID97_RS00415 0.20 +0.2 93,316 + ABID97_RS00415 0.28 -0.4 93,317 - ABID97_RS00415 0.28 +0.2 93,610 + ABID97_RS00415 0.77 -0.4 93,611 - ABID97_RS00415 0.78 -0.1 93,880 + -0.2 93,880 + +0.4 93,880 + -0.3 93,880 + +1.4 93,880 + -1.3 93,880 + -0.0 93,881 - -0.1 93,881 - +0.2 93,881 - +0.2 93,881 - +0.3 93,881 - -1.6 93,881 - -0.2 93,881 - -0.2 93,881 - -0.5 94,084 + ABID97_RS00420 0.14 +0.3 94,084 + ABID97_RS00420 0.14 -1.0 94,576 + ABID97_RS00420 0.56 -0.2 94,576 + ABID97_RS00420 0.56 -0.0 94,576 + ABID97_RS00420 0.56 -0.2 94,577 - ABID97_RS00420 0.56 +0.9 94,660 + ABID97_RS00420 0.63 -1.4 94,661 - ABID97_RS00420 0.63 -0.5 94,661 - ABID97_RS00420 0.63 +0.1 94,666 + ABID97_RS00420 0.64 -1.1 94,666 + ABID97_RS00420 0.64 -0.2 94,666 + ABID97_RS00420 0.64 -0.3 94,666 + ABID97_RS00420 0.64 -0.3 94,667 - ABID97_RS00420 0.64 -0.2 94,667 - ABID97_RS00420 0.64 -0.4 94,667 - ABID97_RS00420 0.64 -0.5 94,667 - ABID97_RS00420 0.64 -0.2 95,182 + -0.5 95,182 + +1.2 95,183 - -0.2 95,291 - ABID97_RS00425 0.14 +0.7 95,291 - ABID97_RS00425 0.14 -1.3 95,291 - ABID97_RS00425 0.14 -0.3 95,291 - ABID97_RS00425 0.14 -0.7 95,308 + ABID97_RS00425 0.15 -0.6 95,497 + ABID97_RS00425 0.35 +0.2 95,543 - ABID97_RS00425 0.40 -1.0 95,543 - ABID97_RS00425 0.40 -0.1 95,543 - ABID97_RS00425 0.40 -0.2 95,680 + ABID97_RS00425 0.54 -0.5 95,680 + ABID97_RS00425 0.54 -0.6 95,681 - ABID97_RS00425 0.54 +0.3 95,725 + ABID97_RS00425 0.59 +0.6 95,725 + ABID97_RS00425 0.59 -1.1 95,725 + ABID97_RS00425 0.59 +0.0 95,726 - ABID97_RS00425 0.59 -1.1 95,726 - ABID97_RS00425 0.59 +0.9 95,776 + ABID97_RS00425 0.64 +2.5 95,980 + ABID97_RS00425 0.85 -0.7 95,980 + ABID97_RS00425 0.85 +0.2 95,980 + ABID97_RS00425 0.85 +0.5 95,981 - ABID97_RS00425 0.85 -0.7 95,981 - ABID97_RS00425 0.85 +0.1
Or see this region's nucleotide sequence