Experiment: D-Glucose (C) MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ddpB and ddpA are separated by 1 nucleotides ddpA and ddpX are separated by 13 nucleotides ddpX and b1489 are separated by 257 nucleotides
b1486: ddpB - D-ala-D-ala transporter subunit (NCBI), at 1,557,931 to 1,558,953
ddpB
b1487: ddpA - D-ala-D-a la transporter subunit (NCBI), at 1,558,955 to 1,560,505
ddpA
b1488: ddpX - D-ala-D-ala dipeptidase, Zn-dependent (NCBI), at 1,560,519 to 1,561,100
ddpX
b1489: b1489 - putative enzyme (VIMSS), at 1,561,358 to 1,563,757
b1489
Position (kb)
1558
1559
1560
1561 Strain fitness (log2 ratio)
-2
-1
0
1 at 1558.000 kb on - strand at 1558.010 kb on - strand at 1558.182 kb on - strand, within ddpB at 1558.182 kb on - strand, within ddpB at 1558.226 kb on + strand, within ddpB at 1558.573 kb on - strand, within ddpB at 1558.909 kb on + strand at 1558.909 kb on + strand at 1558.940 kb on - strand at 1559.057 kb on - strand at 1559.057 kb on - strand at 1559.426 kb on - strand, within ddpA at 1559.525 kb on - strand, within ddpA at 1559.596 kb on - strand, within ddpA at 1559.703 kb on - strand, within ddpA at 1559.785 kb on - strand, within ddpA at 1559.785 kb on - strand, within ddpA at 1560.049 kb on - strand, within ddpA at 1560.382 kb on - strand at 1560.658 kb on - strand, within ddpX at 1560.709 kb on + strand, within ddpX at 1560.869 kb on - strand, within ddpX at 1560.911 kb on + strand, within ddpX at 1561.147 kb on - strand at 1561.147 kb on - strand at 1561.159 kb on - strand at 1561.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) MOPS remove 1,558,000 - +0.4 1,558,010 - -0.6 1,558,182 - ddpB b1486 0.25 -1.2 1,558,182 - ddpB b1486 0.25 +0.6 1,558,226 + ddpB b1486 0.29 -0.1 1,558,573 - ddpB b1486 0.63 +0.2 1,558,909 + +0.9 1,558,909 + -1.0 1,558,940 - +1.2 1,559,057 - +0.8 1,559,057 - +0.2 1,559,426 - ddpA b1487 0.30 +0.1 1,559,525 - ddpA b1487 0.37 -0.7 1,559,596 - ddpA b1487 0.41 -2.0 1,559,703 - ddpA b1487 0.48 -0.1 1,559,785 - ddpA b1487 0.54 +0.1 1,559,785 - ddpA b1487 0.54 -1.4 1,560,049 - ddpA b1487 0.71 +0.2 1,560,382 - -0.9 1,560,658 - ddpX b1488 0.24 +0.2 1,560,709 + ddpX b1488 0.33 -0.1 1,560,869 - ddpX b1488 0.60 +0.6 1,560,911 + ddpX b1488 0.67 -1.4 1,561,147 - +0.7 1,561,147 - -0.1 1,561,159 - -0.3 1,561,463 - +0.4
Or see this region's nucleotide sequence