Experiment: D-Glucose (C) MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydbH and ynbE overlap by 4 nucleotides ynbE and ydbL are separated by 7 nucleotides ydbL and feaR are separated by 171 nucleotides
b1381: ydbH - hypothetical protein (NCBI), at 1,441,075 to 1,443,714
ydbH
b1382: ynbE - predicted lipoprotein (NCBI), at 1,443,711 to 1,443,896
ynbE
b1383: ydbL - orf, hypothetical protein (VIMSS), at 1,443,904 to 1,444,230
ydbL
b1384: feaR - DNA-binding transcriptional dual regulator (NCBI), at 1,444,402 to 1,445,307
feaR
Position (kb)
1443
1444
1445 Strain fitness (log2 ratio)
-2
-1
0
1 at 1442.909 kb on - strand, within ydbH at 1443.006 kb on + strand, within ydbH at 1443.047 kb on + strand, within ydbH at 1443.109 kb on - strand, within ydbH at 1443.157 kb on + strand, within ydbH at 1443.157 kb on + strand, within ydbH at 1443.157 kb on + strand, within ydbH at 1443.157 kb on + strand, within ydbH at 1443.257 kb on - strand, within ydbH at 1443.288 kb on + strand, within ydbH at 1443.288 kb on + strand, within ydbH at 1443.299 kb on - strand, within ydbH at 1443.299 kb on - strand, within ydbH at 1443.315 kb on + strand, within ydbH at 1443.315 kb on + strand, within ydbH at 1443.385 kb on + strand, within ydbH at 1443.385 kb on + strand, within ydbH at 1443.393 kb on - strand, within ydbH at 1443.414 kb on + strand, within ydbH at 1443.414 kb on + strand, within ydbH at 1443.455 kb on + strand at 1443.512 kb on - strand at 1443.522 kb on - strand at 1443.524 kb on + strand at 1443.525 kb on + strand at 1443.525 kb on + strand at 1443.532 kb on - strand at 1443.541 kb on - strand at 1443.606 kb on + strand at 1443.614 kb on + strand at 1443.622 kb on - strand at 1443.644 kb on + strand at 1443.652 kb on - strand at 1443.662 kb on - strand at 1443.662 kb on - strand at 1443.683 kb on - strand at 1443.683 kb on - strand at 1443.783 kb on + strand, within ynbE at 1443.890 kb on + strand at 1443.908 kb on + strand at 1443.951 kb on + strand, within ydbL at 1443.956 kb on + strand, within ydbL at 1443.956 kb on + strand, within ydbL at 1443.963 kb on + strand, within ydbL at 1444.102 kb on + strand, within ydbL at 1444.250 kb on + strand at 1444.250 kb on + strand at 1444.256 kb on + strand at 1444.390 kb on - strand at 1444.537 kb on - strand, within feaR at 1444.581 kb on - strand, within feaR at 1444.611 kb on - strand, within feaR at 1444.640 kb on - strand, within feaR at 1444.787 kb on - strand, within feaR at 1444.845 kb on - strand, within feaR at 1444.866 kb on - strand, within feaR at 1444.866 kb on - strand, within feaR at 1444.872 kb on - strand, within feaR at 1444.935 kb on - strand, within feaR at 1445.072 kb on + strand, within feaR at 1445.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) MOPS remove 1,442,909 - ydbH b1381 0.69 -0.1 1,443,006 + ydbH b1381 0.73 +0.1 1,443,047 + ydbH b1381 0.75 +0.0 1,443,109 - ydbH b1381 0.77 +1.1 1,443,157 + ydbH b1381 0.79 +0.5 1,443,157 + ydbH b1381 0.79 -0.3 1,443,157 + ydbH b1381 0.79 -1.4 1,443,157 + ydbH b1381 0.79 -0.7 1,443,257 - ydbH b1381 0.83 +0.3 1,443,288 + ydbH b1381 0.84 +0.4 1,443,288 + ydbH b1381 0.84 -0.3 1,443,299 - ydbH b1381 0.84 -1.0 1,443,299 - ydbH b1381 0.84 -0.4 1,443,315 + ydbH b1381 0.85 +0.4 1,443,315 + ydbH b1381 0.85 -2.3 1,443,385 + ydbH b1381 0.88 +1.1 1,443,385 + ydbH b1381 0.88 -0.4 1,443,393 - ydbH b1381 0.88 -0.5 1,443,414 + ydbH b1381 0.89 -0.1 1,443,414 + ydbH b1381 0.89 +0.8 1,443,455 + +0.1 1,443,512 - -0.3 1,443,522 - -0.2 1,443,524 + +0.4 1,443,525 + +0.5 1,443,525 + +0.5 1,443,532 - -0.6 1,443,541 - +0.5 1,443,606 + +0.1 1,443,614 + -0.1 1,443,622 - -0.3 1,443,644 + +0.8 1,443,652 - +0.4 1,443,662 - +0.4 1,443,662 - -1.4 1,443,683 - +1.1 1,443,683 - -0.2 1,443,783 + ynbE b1382 0.39 -0.3 1,443,890 + -0.2 1,443,908 + -0.2 1,443,951 + ydbL b1383 0.14 -0.0 1,443,956 + ydbL b1383 0.16 +0.9 1,443,956 + ydbL b1383 0.16 -1.3 1,443,963 + ydbL b1383 0.18 -1.2 1,444,102 + ydbL b1383 0.61 -0.1 1,444,250 + -0.5 1,444,250 + -0.1 1,444,256 + +0.1 1,444,390 - +0.3 1,444,537 - feaR b1384 0.15 +0.3 1,444,581 - feaR b1384 0.20 +0.6 1,444,611 - feaR b1384 0.23 +1.2 1,444,640 - feaR b1384 0.26 +0.2 1,444,787 - feaR b1384 0.42 -0.1 1,444,845 - feaR b1384 0.49 -0.1 1,444,866 - feaR b1384 0.51 +0.4 1,444,866 - feaR b1384 0.51 +0.1 1,444,872 - feaR b1384 0.52 -0.6 1,444,935 - feaR b1384 0.59 +0.2 1,445,072 + feaR b1384 0.74 +0.5 1,445,230 - +0.7
Or see this region's nucleotide sequence