Experiment: D-Glucose (C) MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt treR and mgtL are separated by 184 nucleotides mgtL and mgtA are separated by 140 nucleotides
b4241: treR - trehalose repressor (NCBI), at 4,464,322 to 4,465,269
treR
b4702: mgtL - regulatory leader peptide for mgtA (NCBI), at 4,465,454 to 4,465,507
mgtL
b4242: mgtA - magnesium transporter (NCBI), at 4,465,648 to 4,468,344
mgtA
Position (kb)
4465
4466 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4464.476 kb on - strand, within treR at 4464.545 kb on - strand, within treR at 4464.556 kb on + strand at 4464.609 kb on - strand, within treR at 4464.650 kb on + strand, within treR at 4464.651 kb on + strand, within treR at 4464.662 kb on + strand, within treR at 4464.662 kb on + strand, within treR at 4464.667 kb on - strand, within treR at 4464.713 kb on - strand, within treR at 4464.713 kb on - strand, within treR at 4464.748 kb on + strand, within treR at 4464.748 kb on + strand at 4464.754 kb on + strand, within treR at 4464.754 kb on + strand, within treR at 4464.762 kb on + strand, within treR at 4464.762 kb on + strand, within treR at 4464.782 kb on - strand, within treR at 4464.794 kb on - strand, within treR at 4464.795 kb on - strand, within treR at 4464.795 kb on - strand, within treR at 4464.796 kb on + strand, within treR at 4464.816 kb on + strand, within treR at 4464.816 kb on + strand, within treR at 4464.845 kb on + strand, within treR at 4464.851 kb on + strand, within treR at 4464.851 kb on + strand, within treR at 4464.853 kb on + strand, within treR at 4464.885 kb on - strand, within treR at 4464.898 kb on - strand, within treR at 4464.898 kb on - strand, within treR at 4464.900 kb on + strand, within treR at 4464.900 kb on + strand, within treR at 4464.900 kb on + strand, within treR at 4464.908 kb on - strand, within treR at 4464.908 kb on - strand, within treR at 4464.908 kb on - strand, within treR at 4464.988 kb on + strand, within treR at 4464.988 kb on + strand, within treR at 4464.995 kb on - strand, within treR at 4464.995 kb on - strand, within treR at 4464.996 kb on - strand, within treR at 4464.996 kb on - strand, within treR at 4465.015 kb on + strand, within treR at 4465.016 kb on - strand, within treR at 4465.018 kb on - strand, within treR at 4465.058 kb on - strand, within treR at 4465.060 kb on + strand, within treR at 4465.080 kb on + strand, within treR at 4465.088 kb on - strand, within treR at 4465.105 kb on - strand, within treR at 4465.120 kb on - strand, within treR at 4465.120 kb on - strand, within treR at 4465.166 kb on - strand, within treR at 4465.166 kb on - strand, within treR at 4465.183 kb on + strand at 4465.183 kb on + strand at 4465.192 kb on + strand at 4465.192 kb on + strand at 4465.200 kb on - strand at 4465.200 kb on - strand at 4465.209 kb on + strand at 4465.217 kb on - strand at 4465.226 kb on + strand at 4465.226 kb on - strand at 4465.228 kb on + strand at 4465.236 kb on - strand at 4465.236 kb on - strand at 4465.236 kb on - strand at 4465.236 kb on - strand at 4465.276 kb on + strand at 4465.276 kb on - strand at 4465.276 kb on - strand at 4465.286 kb on + strand at 4465.299 kb on - strand at 4465.305 kb on + strand at 4465.305 kb on + strand at 4465.309 kb on + strand at 4465.313 kb on + strand at 4465.313 kb on + strand at 4465.316 kb on + strand at 4465.317 kb on - strand at 4465.317 kb on - strand at 4465.326 kb on + strand at 4465.326 kb on + strand at 4465.331 kb on + strand at 4465.331 kb on + strand at 4465.333 kb on + strand at 4465.339 kb on + strand at 4465.339 kb on + strand at 4465.371 kb on + strand at 4465.372 kb on + strand at 4465.377 kb on + strand at 4465.379 kb on - strand at 4465.379 kb on - strand at 4465.379 kb on - strand at 4465.383 kb on + strand at 4465.432 kb on + strand at 4465.432 kb on + strand at 4465.449 kb on + strand at 4465.449 kb on + strand at 4465.452 kb on + strand at 4465.452 kb on + strand at 4465.452 kb on + strand at 4465.453 kb on + strand at 4465.453 kb on + strand at 4465.456 kb on - strand at 4465.457 kb on - strand at 4465.457 kb on - strand at 4465.467 kb on - strand, within mgtL at 4465.467 kb on - strand, within mgtL at 4465.480 kb on - strand, within mgtL at 4465.480 kb on - strand, within mgtL at 4465.486 kb on - strand, within mgtL at 4465.486 kb on - strand, within mgtL at 4465.523 kb on + strand at 4465.525 kb on + strand at 4465.525 kb on + strand at 4465.525 kb on + strand at 4465.531 kb on + strand at 4465.531 kb on + strand at 4465.533 kb on + strand at 4465.543 kb on - strand at 4465.543 kb on - strand at 4465.543 kb on - strand at 4465.543 kb on - strand at 4465.543 kb on - strand at 4465.567 kb on - strand at 4465.567 kb on - strand at 4465.579 kb on - strand at 4465.619 kb on - strand at 4465.621 kb on + strand at 4465.621 kb on + strand at 4465.621 kb on + strand at 4465.629 kb on - strand at 4465.629 kb on - strand at 4465.631 kb on + strand at 4465.631 kb on + strand at 4465.631 kb on + strand at 4465.631 kb on + strand at 4465.631 kb on + strand at 4465.642 kb on + strand at 4465.644 kb on - strand at 4465.652 kb on - strand at 4465.652 kb on - strand at 4465.694 kb on + strand at 4465.694 kb on + strand at 4465.706 kb on - strand at 4465.706 kb on - strand at 4465.707 kb on - strand at 4465.728 kb on + strand at 4465.743 kb on - strand at 4465.745 kb on - strand at 4465.745 kb on - strand at 4465.755 kb on + strand at 4465.762 kb on + strand at 4465.763 kb on - strand at 4465.763 kb on - strand at 4465.763 kb on - strand at 4465.796 kb on + strand at 4465.814 kb on + strand at 4465.816 kb on + strand at 4465.816 kb on + strand at 4465.832 kb on - strand at 4465.834 kb on - strand at 4465.835 kb on + strand at 4465.842 kb on - strand at 4465.859 kb on - strand at 4465.859 kb on - strand at 4465.859 kb on - strand at 4465.859 kb on - strand at 4465.859 kb on - strand at 4465.863 kb on - strand at 4465.905 kb on - strand at 4465.911 kb on + strand at 4465.919 kb on - strand, within mgtA at 4465.921 kb on + strand, within mgtA at 4465.921 kb on + strand, within mgtA at 4465.921 kb on + strand, within mgtA at 4465.922 kb on + strand, within mgtA at 4465.922 kb on + strand, within mgtA at 4465.922 kb on + strand, within mgtA at 4465.930 kb on - strand, within mgtA at 4465.932 kb on + strand, within mgtA at 4465.932 kb on + strand, within mgtA at 4465.934 kb on + strand, within mgtA at 4465.942 kb on - strand, within mgtA at 4465.942 kb on - strand, within mgtA at 4465.969 kb on - strand, within mgtA at 4465.986 kb on - strand, within mgtA at 4465.986 kb on - strand, within mgtA at 4466.033 kb on + strand, within mgtA at 4466.036 kb on + strand, within mgtA at 4466.042 kb on - strand, within mgtA at 4466.042 kb on - strand, within mgtA at 4466.067 kb on + strand, within mgtA at 4466.067 kb on - strand, within mgtA at 4466.067 kb on - strand, within mgtA at 4466.068 kb on + strand, within mgtA at 4466.072 kb on + strand, within mgtA at 4466.072 kb on + strand, within mgtA at 4466.076 kb on - strand, within mgtA at 4466.076 kb on - strand, within mgtA at 4466.078 kb on - strand, within mgtA at 4466.080 kb on - strand, within mgtA at 4466.085 kb on - strand, within mgtA at 4466.090 kb on + strand, within mgtA at 4466.092 kb on - strand, within mgtA at 4466.092 kb on - strand, within mgtA at 4466.097 kb on - strand, within mgtA at 4466.103 kb on + strand, within mgtA at 4466.114 kb on + strand, within mgtA at 4466.114 kb on + strand, within mgtA at 4466.114 kb on - strand, within mgtA at 4466.127 kb on + strand, within mgtA at 4466.252 kb on + strand, within mgtA at 4466.262 kb on + strand, within mgtA at 4466.262 kb on + strand, within mgtA at 4466.262 kb on + strand, within mgtA at 4466.292 kb on + strand, within mgtA at 4466.292 kb on + strand, within mgtA at 4466.300 kb on - strand, within mgtA at 4466.300 kb on - strand, within mgtA at 4466.300 kb on - strand, within mgtA at 4466.352 kb on + strand, within mgtA at 4466.360 kb on - strand, within mgtA at 4466.378 kb on + strand, within mgtA at 4466.378 kb on + strand, within mgtA at 4466.393 kb on + strand, within mgtA at 4466.402 kb on + strand, within mgtA at 4466.438 kb on - strand, within mgtA at 4466.442 kb on - strand, within mgtA at 4466.442 kb on - strand, within mgtA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) MOPS remove 4,464,476 - treR b4241 0.16 -0.3 4,464,545 - treR b4241 0.24 -0.1 4,464,556 + +2.9 4,464,609 - treR b4241 0.30 +0.1 4,464,650 + treR b4241 0.35 -0.3 4,464,651 + treR b4241 0.35 -0.5 4,464,662 + treR b4241 0.36 +0.0 4,464,662 + treR b4241 0.36 +0.6 4,464,667 - treR b4241 0.36 -0.0 4,464,713 - treR b4241 0.41 -0.6 4,464,713 - treR b4241 0.41 -1.0 4,464,748 + treR b4241 0.45 -0.4 4,464,748 + -0.2 4,464,754 + treR b4241 0.46 +0.1 4,464,754 + treR b4241 0.46 -0.4 4,464,762 + treR b4241 0.46 +0.8 4,464,762 + treR b4241 0.46 -0.2 4,464,782 - treR b4241 0.49 +0.5 4,464,794 - treR b4241 0.50 -1.0 4,464,795 - treR b4241 0.50 +0.5 4,464,795 - treR b4241 0.50 -1.2 4,464,796 + treR b4241 0.50 +0.4 4,464,816 + treR b4241 0.52 -0.2 4,464,816 + treR b4241 0.52 +0.4 4,464,845 + treR b4241 0.55 +0.0 4,464,851 + treR b4241 0.56 -0.8 4,464,851 + treR b4241 0.56 +0.2 4,464,853 + treR b4241 0.56 -1.0 4,464,885 - treR b4241 0.59 -0.2 4,464,898 - treR b4241 0.61 +0.4 4,464,898 - treR b4241 0.61 +0.8 4,464,900 + treR b4241 0.61 -0.9 4,464,900 + treR b4241 0.61 +0.5 4,464,900 + treR b4241 0.61 +0.0 4,464,908 - treR b4241 0.62 +0.3 4,464,908 - treR b4241 0.62 +0.0 4,464,908 - treR b4241 0.62 -0.4 4,464,988 + treR b4241 0.70 +0.6 4,464,988 + treR b4241 0.70 -0.1 4,464,995 - treR b4241 0.71 -0.8 4,464,995 - treR b4241 0.71 +0.0 4,464,996 - treR b4241 0.71 +0.5 4,464,996 - treR b4241 0.71 +0.7 4,465,015 + treR b4241 0.73 -0.5 4,465,016 - treR b4241 0.73 -0.4 4,465,018 - treR b4241 0.73 -0.5 4,465,058 - treR b4241 0.78 -1.4 4,465,060 + treR b4241 0.78 -0.3 4,465,080 + treR b4241 0.80 -0.3 4,465,088 - treR b4241 0.81 -0.8 4,465,105 - treR b4241 0.83 +0.4 4,465,120 - treR b4241 0.84 +0.5 4,465,120 - treR b4241 0.84 +0.4 4,465,166 - treR b4241 0.89 -0.3 4,465,166 - treR b4241 0.89 -0.5 4,465,183 + -0.2 4,465,183 + +0.0 4,465,192 + -0.2 4,465,192 + +0.4 4,465,200 - -1.8 4,465,200 - +0.2 4,465,209 + -1.4 4,465,217 - +0.0 4,465,226 + -0.5 4,465,226 - +0.4 4,465,228 + -0.5 4,465,236 - +0.8 4,465,236 - -0.2 4,465,236 - +0.8 4,465,236 - +1.3 4,465,276 + -0.2 4,465,276 - -2.8 4,465,276 - +2.2 4,465,286 + -0.4 4,465,299 - +0.4 4,465,305 + -1.7 4,465,305 + +0.2 4,465,309 + -0.3 4,465,313 + -0.3 4,465,313 + -0.5 4,465,316 + -1.5 4,465,317 - -0.5 4,465,317 - -0.2 4,465,326 + +0.5 4,465,326 + -0.2 4,465,331 + -0.2 4,465,331 + -0.8 4,465,333 + -0.4 4,465,339 + +0.6 4,465,339 + -0.2 4,465,371 + -0.4 4,465,372 + -1.1 4,465,377 + -0.0 4,465,379 - +0.6 4,465,379 - -1.2 4,465,379 - +0.0 4,465,383 + +0.6 4,465,432 + -0.2 4,465,432 + +0.6 4,465,449 + -0.3 4,465,449 + +0.0 4,465,452 + +0.4 4,465,452 + +0.4 4,465,452 + +0.1 4,465,453 + -0.6 4,465,453 + -0.4 4,465,456 - -1.4 4,465,457 - -2.4 4,465,457 - -1.8 4,465,467 - mgtL b4702 0.24 -0.6 4,465,467 - mgtL b4702 0.24 +1.6 4,465,480 - mgtL b4702 0.48 -1.5 4,465,480 - mgtL b4702 0.48 -0.7 4,465,486 - mgtL b4702 0.59 -0.8 4,465,486 - mgtL b4702 0.59 -0.4 4,465,523 + +1.4 4,465,525 + +0.4 4,465,525 + -0.4 4,465,525 + -0.9 4,465,531 + -1.7 4,465,531 + +0.0 4,465,533 + -0.2 4,465,543 - -2.6 4,465,543 - -0.6 4,465,543 - -1.2 4,465,543 - -2.5 4,465,543 - -1.7 4,465,567 - -2.6 4,465,567 - -2.5 4,465,579 - -2.6 4,465,619 - -1.9 4,465,621 + -0.3 4,465,621 + -0.9 4,465,621 + -0.6 4,465,629 - +0.0 4,465,629 - -2.1 4,465,631 + -1.4 4,465,631 + -1.0 4,465,631 + -0.6 4,465,631 + -1.3 4,465,631 + -0.9 4,465,642 + -1.1 4,465,644 - -0.6 4,465,652 - -0.4 4,465,652 - -0.8 4,465,694 + -1.6 4,465,694 + -1.6 4,465,706 - -0.7 4,465,706 - +0.3 4,465,707 - -2.4 4,465,728 + -1.6 4,465,743 - -1.3 4,465,745 - -0.7 4,465,745 - -2.2 4,465,755 + -1.3 4,465,762 + -0.8 4,465,763 - -1.0 4,465,763 - -0.7 4,465,763 - -1.7 4,465,796 + -0.4 4,465,814 + +0.3 4,465,816 + -2.7 4,465,816 + -1.0 4,465,832 - -1.4 4,465,834 - -1.8 4,465,835 + -1.7 4,465,842 - -0.5 4,465,859 - -1.3 4,465,859 - -2.4 4,465,859 - -2.7 4,465,859 - -1.0 4,465,859 - -2.5 4,465,863 - -2.3 4,465,905 - -0.9 4,465,911 + -1.9 4,465,919 - mgtA b4242 0.10 -1.9 4,465,921 + mgtA b4242 0.10 -2.4 4,465,921 + mgtA b4242 0.10 -1.7 4,465,921 + mgtA b4242 0.10 -0.4 4,465,922 + mgtA b4242 0.10 +1.4 4,465,922 + mgtA b4242 0.10 -1.5 4,465,922 + mgtA b4242 0.10 -1.1 4,465,930 - mgtA b4242 0.10 -1.7 4,465,932 + mgtA b4242 0.11 -2.1 4,465,932 + mgtA b4242 0.11 -1.7 4,465,934 + mgtA b4242 0.11 -2.8 4,465,942 - mgtA b4242 0.11 -1.1 4,465,942 - mgtA b4242 0.11 -1.7 4,465,969 - mgtA b4242 0.12 -1.2 4,465,986 - mgtA b4242 0.13 +0.5 4,465,986 - mgtA b4242 0.13 -0.0 4,466,033 + mgtA b4242 0.14 -1.2 4,466,036 + mgtA b4242 0.14 -0.8 4,466,042 - mgtA b4242 0.15 -1.3 4,466,042 - mgtA b4242 0.15 -0.8 4,466,067 + mgtA b4242 0.16 -1.0 4,466,067 - mgtA b4242 0.16 -2.3 4,466,067 - mgtA b4242 0.16 -3.3 4,466,068 + mgtA b4242 0.16 -1.8 4,466,072 + mgtA b4242 0.16 -1.8 4,466,072 + mgtA b4242 0.16 -1.7 4,466,076 - mgtA b4242 0.16 -1.3 4,466,076 - mgtA b4242 0.16 -1.5 4,466,078 - mgtA b4242 0.16 -1.4 4,466,080 - mgtA b4242 0.16 -1.5 4,466,085 - mgtA b4242 0.16 -2.0 4,466,090 + mgtA b4242 0.16 -1.4 4,466,092 - mgtA b4242 0.16 -2.1 4,466,092 - mgtA b4242 0.16 -1.8 4,466,097 - mgtA b4242 0.17 -0.3 4,466,103 + mgtA b4242 0.17 -1.2 4,466,114 + mgtA b4242 0.17 -2.3 4,466,114 + mgtA b4242 0.17 -1.3 4,466,114 - mgtA b4242 0.17 -1.0 4,466,127 + mgtA b4242 0.18 -1.7 4,466,252 + mgtA b4242 0.22 -1.7 4,466,262 + mgtA b4242 0.23 -2.5 4,466,262 + mgtA b4242 0.23 -2.3 4,466,262 + mgtA b4242 0.23 -0.6 4,466,292 + mgtA b4242 0.24 -1.6 4,466,292 + mgtA b4242 0.24 -1.3 4,466,300 - mgtA b4242 0.24 -1.0 4,466,300 - mgtA b4242 0.24 -1.6 4,466,300 - mgtA b4242 0.24 -0.6 4,466,352 + mgtA b4242 0.26 -1.4 4,466,360 - mgtA b4242 0.26 -2.2 4,466,378 + mgtA b4242 0.27 -2.4 4,466,378 + mgtA b4242 0.27 -2.1 4,466,393 + mgtA b4242 0.28 -1.2 4,466,402 + mgtA b4242 0.28 -2.9 4,466,438 - mgtA b4242 0.29 -2.8 4,466,442 - mgtA b4242 0.29 -0.4 4,466,442 - mgtA b4242 0.29 +0.8
Or see this region's nucleotide sequence