Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3742 and Echvi_3743 are separated by 110 nucleotides Echvi_3743 and Echvi_3744 are separated by 663 nucleotides
Echvi_3742: Echvi_3742 - Outer membrane protein, at 4,457,247 to 4,458,581
_3742
Echvi_3743: Echvi_3743 - Transcriptional regulator, at 4,458,692 to 4,459,264
_3743
Echvi_3744: Echvi_3744 - hypothetical protein, at 4,459,928 to 4,460,182
_3744
Position (kb)
4458
4459
4460 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4457.696 kb on - strand, within Echvi_3742 at 4457.702 kb on - strand, within Echvi_3742 at 4457.718 kb on - strand, within Echvi_3742 at 4457.725 kb on + strand, within Echvi_3742 at 4457.725 kb on + strand, within Echvi_3742 at 4457.726 kb on - strand, within Echvi_3742 at 4457.726 kb on - strand, within Echvi_3742 at 4457.726 kb on - strand, within Echvi_3742 at 4457.825 kb on + strand, within Echvi_3742 at 4457.856 kb on + strand, within Echvi_3742 at 4457.856 kb on + strand, within Echvi_3742 at 4457.856 kb on + strand, within Echvi_3742 at 4457.863 kb on + strand, within Echvi_3742 at 4457.863 kb on + strand, within Echvi_3742 at 4457.864 kb on - strand, within Echvi_3742 at 4457.915 kb on - strand, within Echvi_3742 at 4457.954 kb on + strand, within Echvi_3742 at 4457.955 kb on - strand, within Echvi_3742 at 4458.046 kb on + strand, within Echvi_3742 at 4458.047 kb on - strand, within Echvi_3742 at 4458.116 kb on - strand, within Echvi_3742 at 4458.116 kb on - strand, within Echvi_3742 at 4458.116 kb on - strand, within Echvi_3742 at 4458.190 kb on + strand, within Echvi_3742 at 4458.190 kb on + strand, within Echvi_3742 at 4458.213 kb on + strand, within Echvi_3742 at 4458.214 kb on - strand, within Echvi_3742 at 4458.243 kb on + strand, within Echvi_3742 at 4458.267 kb on - strand, within Echvi_3742 at 4458.285 kb on - strand, within Echvi_3742 at 4458.316 kb on - strand, within Echvi_3742 at 4458.316 kb on - strand, within Echvi_3742 at 4458.451 kb on + strand at 4458.452 kb on - strand at 4458.458 kb on + strand at 4458.458 kb on + strand at 4458.458 kb on + strand at 4458.480 kb on + strand at 4458.514 kb on + strand at 4458.535 kb on - strand at 4458.555 kb on + strand at 4458.555 kb on + strand at 4458.555 kb on + strand at 4458.605 kb on - strand at 4458.605 kb on - strand at 4458.608 kb on + strand at 4458.609 kb on - strand at 4458.616 kb on + strand at 4458.617 kb on - strand at 4458.617 kb on - strand at 4458.620 kb on + strand at 4458.706 kb on + strand at 4458.707 kb on - strand at 4458.785 kb on + strand, within Echvi_3743 at 4458.785 kb on + strand, within Echvi_3743 at 4458.870 kb on - strand, within Echvi_3743 at 4458.996 kb on + strand, within Echvi_3743 at 4459.094 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.098 kb on + strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.099 kb on - strand, within Echvi_3743 at 4459.244 kb on + strand at 4459.258 kb on + strand at 4459.259 kb on - strand at 4459.346 kb on - strand at 4459.365 kb on + strand at 4459.414 kb on - strand at 4459.416 kb on - strand at 4459.445 kb on + strand at 4459.446 kb on - strand at 4459.471 kb on + strand at 4459.484 kb on - strand at 4459.535 kb on + strand at 4459.548 kb on + strand at 4459.549 kb on - strand at 4459.549 kb on - strand at 4459.549 kb on - strand at 4459.557 kb on + strand at 4459.557 kb on + strand at 4459.558 kb on - strand at 4459.558 kb on - strand at 4459.578 kb on + strand at 4459.579 kb on - strand at 4459.579 kb on - strand at 4459.579 kb on - strand at 4459.680 kb on - strand at 4459.741 kb on + strand at 4459.742 kb on - strand at 4459.742 kb on - strand at 4459.749 kb on + strand at 4459.794 kb on + strand at 4459.795 kb on - strand at 4459.817 kb on - strand at 4459.817 kb on - strand at 4459.830 kb on + strand at 4459.830 kb on + strand at 4459.830 kb on + strand at 4459.831 kb on - strand at 4459.835 kb on - strand at 4459.905 kb on - strand at 4459.946 kb on - strand at 4459.965 kb on + strand, within Echvi_3744 at 4459.965 kb on + strand, within Echvi_3744 at 4459.992 kb on - strand, within Echvi_3744 at 4460.053 kb on + strand, within Echvi_3744 at 4460.053 kb on + strand, within Echvi_3744 at 4460.054 kb on - strand, within Echvi_3744 at 4460.141 kb on - strand at 4460.141 kb on - strand, within Echvi_3744 at 4460.145 kb on - strand, within Echvi_3744 at 4460.175 kb on - strand at 4460.175 kb on - strand at 4460.178 kb on - strand at 4460.178 kb on - strand at 4460.193 kb on + strand at 4460.226 kb on - strand at 4460.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 4,457,696 - Echvi_3742 0.34 +0.3 4,457,702 - Echvi_3742 0.34 -1.6 4,457,718 - Echvi_3742 0.35 -0.1 4,457,725 + Echvi_3742 0.36 -0.5 4,457,725 + Echvi_3742 0.36 -0.5 4,457,726 - Echvi_3742 0.36 -0.2 4,457,726 - Echvi_3742 0.36 -1.8 4,457,726 - Echvi_3742 0.36 -1.8 4,457,825 + Echvi_3742 0.43 -0.3 4,457,856 + Echvi_3742 0.46 -2.2 4,457,856 + Echvi_3742 0.46 +0.1 4,457,856 + Echvi_3742 0.46 -0.4 4,457,863 + Echvi_3742 0.46 -0.6 4,457,863 + Echvi_3742 0.46 -1.0 4,457,864 - Echvi_3742 0.46 -4.0 4,457,915 - Echvi_3742 0.50 -0.5 4,457,954 + Echvi_3742 0.53 -0.9 4,457,955 - Echvi_3742 0.53 -1.8 4,458,046 + Echvi_3742 0.60 -1.0 4,458,047 - Echvi_3742 0.60 -0.7 4,458,116 - Echvi_3742 0.65 -2.8 4,458,116 - Echvi_3742 0.65 -0.5 4,458,116 - Echvi_3742 0.65 -0.9 4,458,190 + Echvi_3742 0.71 +0.1 4,458,190 + Echvi_3742 0.71 -2.8 4,458,213 + Echvi_3742 0.72 -0.5 4,458,214 - Echvi_3742 0.72 +0.3 4,458,243 + Echvi_3742 0.75 -1.4 4,458,267 - Echvi_3742 0.76 +0.2 4,458,285 - Echvi_3742 0.78 -0.6 4,458,316 - Echvi_3742 0.80 -1.3 4,458,316 - Echvi_3742 0.80 -0.2 4,458,451 + -0.2 4,458,452 - -0.1 4,458,458 + -1.4 4,458,458 + +0.1 4,458,458 + -0.8 4,458,480 + +0.3 4,458,514 + +2.1 4,458,535 - +0.1 4,458,555 + -1.1 4,458,555 + +0.1 4,458,555 + -0.7 4,458,605 - +0.2 4,458,605 - +0.6 4,458,608 + -0.8 4,458,609 - -0.8 4,458,616 + -1.0 4,458,617 - +0.4 4,458,617 - +2.2 4,458,620 + -0.2 4,458,706 + -1.1 4,458,707 - +0.9 4,458,785 + Echvi_3743 0.16 -0.8 4,458,785 + Echvi_3743 0.16 -1.5 4,458,870 - Echvi_3743 0.31 +0.4 4,458,996 + Echvi_3743 0.53 +0.4 4,459,094 + Echvi_3743 0.70 +0.5 4,459,098 + Echvi_3743 0.71 -1.1 4,459,098 + Echvi_3743 0.71 -0.5 4,459,098 + Echvi_3743 0.71 -1.2 4,459,098 + Echvi_3743 0.71 +0.2 4,459,098 + Echvi_3743 0.71 -0.9 4,459,098 + Echvi_3743 0.71 -0.4 4,459,098 + Echvi_3743 0.71 +0.1 4,459,098 + Echvi_3743 0.71 -1.6 4,459,098 + Echvi_3743 0.71 -2.5 4,459,098 + Echvi_3743 0.71 -0.5 4,459,099 - Echvi_3743 0.71 +1.4 4,459,099 - Echvi_3743 0.71 +0.2 4,459,099 - Echvi_3743 0.71 -0.1 4,459,099 - Echvi_3743 0.71 +0.8 4,459,099 - Echvi_3743 0.71 -0.4 4,459,099 - Echvi_3743 0.71 -0.3 4,459,244 + +0.1 4,459,258 + -0.3 4,459,259 - +1.9 4,459,346 - +3.0 4,459,365 + -2.0 4,459,414 - +0.8 4,459,416 - +1.1 4,459,445 + -1.1 4,459,446 - -0.1 4,459,471 + +0.2 4,459,484 - +1.4 4,459,535 + -0.8 4,459,548 + -1.0 4,459,549 - +1.7 4,459,549 - -0.6 4,459,549 - +1.6 4,459,557 + -0.3 4,459,557 + +0.6 4,459,558 - +1.4 4,459,558 - +1.7 4,459,578 + -0.1 4,459,579 - +1.3 4,459,579 - +1.3 4,459,579 - +2.0 4,459,680 - +0.2 4,459,741 + +0.3 4,459,742 - +0.8 4,459,742 - +0.5 4,459,749 + -0.4 4,459,794 + +1.0 4,459,795 - -0.1 4,459,817 - +1.8 4,459,817 - +1.6 4,459,830 + +1.5 4,459,830 + +0.2 4,459,830 + +2.8 4,459,831 - +1.5 4,459,835 - +1.0 4,459,905 - +0.5 4,459,946 - +0.4 4,459,965 + Echvi_3744 0.15 +0.7 4,459,965 + Echvi_3744 0.15 +1.8 4,459,992 - Echvi_3744 0.25 +0.8 4,460,053 + Echvi_3744 0.49 -1.8 4,460,053 + Echvi_3744 0.49 +1.4 4,460,054 - Echvi_3744 0.49 -0.2 4,460,141 - +0.8 4,460,141 - Echvi_3744 0.84 +0.3 4,460,145 - Echvi_3744 0.85 +0.5 4,460,175 - +0.7 4,460,175 - -0.2 4,460,178 - +0.4 4,460,178 - +0.9 4,460,193 + +0.3 4,460,226 - -0.3 4,460,233 - +0.6
Or see this region's nucleotide sequence