Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2691

Experiment: m.b. nitrite 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 30 mM
3,196,448	-				+0.6
3,196,465	+				+0.3
3,196,466	-				+1.3
3,196,469	-				-0.5
3,196,477	+				-1.4
3,196,484	+				-0.9
3,196,595	+		Echvi_2690	0.17	+0.0
3,196,596	-		Echvi_2690	0.17	-1.5
3,196,602	+		Echvi_2690	0.17	+1.2
3,196,602	+		Echvi_2690	0.17	-0.8
3,196,602	+		Echvi_2690	0.17	+0.2
3,196,603	-		Echvi_2690	0.17	+1.1
3,196,603	-		Echvi_2690	0.17	+2.0
3,196,603	-		Echvi_2690	0.17	-0.1
3,196,604	+		Echvi_2690	0.17	+1.7
3,196,604	+		Echvi_2690	0.17	-0.4
3,196,604	+		Echvi_2690	0.17	-1.8
3,196,617	+		Echvi_2690	0.19	+0.4
3,196,619	+		Echvi_2690	0.19	+0.0
3,196,620	-		Echvi_2690	0.19	-0.7
3,196,633	-		Echvi_2690	0.20	+0.5
3,196,633	-		Echvi_2690	0.20	+0.6
3,196,636	+		Echvi_2690	0.21	+1.1
3,196,636	+		Echvi_2690	0.21	+0.7
3,196,654	-		Echvi_2690	0.23	+0.4
3,196,655	+		Echvi_2690	0.23	+0.5
3,196,655	+		Echvi_2690	0.23	-0.6
3,196,655	+		Echvi_2690	0.23	-0.4
3,196,656	-		Echvi_2690	0.23	+1.3
3,196,731	-		Echvi_2690	0.30	-0.0
3,196,747	-		Echvi_2690	0.32	+1.4
3,196,747	-		Echvi_2690	0.32	+0.1
3,196,747	-		Echvi_2690	0.32	-0.9
3,196,750	+		Echvi_2690	0.32	+0.6
3,196,750	+		Echvi_2690	0.32	-1.7
3,196,750	+		Echvi_2690	0.32	+0.4
3,196,751	-		Echvi_2690	0.32	+1.3
3,196,751	-		Echvi_2690	0.32	+1.9
3,196,854	+		Echvi_2690	0.43	-1.3
3,196,855	-		Echvi_2690	0.43	+0.3
3,196,890	+		Echvi_2690	0.46	-0.5
3,196,969	+		Echvi_2690	0.54	-0.2
3,196,969	+		Echvi_2690	0.54	-0.8
3,196,969	+		Echvi_2690	0.54	+0.0
3,196,973	+		Echvi_2690	0.55	-1.8
3,196,973	+		Echvi_2690	0.55	+1.5
3,196,974	-		Echvi_2690	0.55	-1.7
3,196,974	-		Echvi_2690	0.55	+0.3
3,196,974	-		Echvi_2690	0.55	+0.8
3,197,031	+		Echvi_2690	0.61	+0.0
3,197,031	+		Echvi_2690	0.61	+0.6
3,197,031	+		Echvi_2690	0.61	-1.7
3,197,031	+		Echvi_2690	0.61	+1.8
3,197,032	-		Echvi_2690	0.61	-0.6
3,197,032	-		Echvi_2690	0.61	-0.3
3,197,032	-		Echvi_2690	0.61	+0.5
3,197,052	-		Echvi_2690	0.63	+0.0
3,197,094	-		Echvi_2690	0.67	-0.3
3,197,098	+		Echvi_2690	0.67	-1.7
3,197,099	-		Echvi_2690	0.67	+0.9
3,197,139	+		Echvi_2690	0.72	-0.8
3,197,171	+		Echvi_2690	0.75	-1.3
3,197,190	+		Echvi_2690	0.77	-1.5
3,197,191	-		Echvi_2690	0.77	-1.1
3,197,238	+		Echvi_2690	0.82	-0.2
3,197,239	-		Echvi_2690	0.82	-0.3
3,197,255	+		Echvi_2690	0.83	+0.3
3,197,255	+		Echvi_2690	0.83	+0.8
3,197,256	-		Echvi_2690	0.83	-0.3
3,197,256	-		Echvi_2690	0.83	-0.3
3,197,348	+				+0.1
3,197,349	-				-0.3
3,197,358	-				-0.5
3,197,376	-				+1.3
3,197,376	-				-0.4
3,197,378	-				-0.5
3,197,403	+				+0.1
3,197,421	+				-0.9
3,197,422	-				+0.9
3,197,483	+				+0.6
3,197,483	+				-0.1
3,197,489	+				-0.7
3,197,539	-				-0.3
3,197,541	+				+0.0
3,197,561	-		Echvi_2691	0.12	-1.6
3,197,572	-		Echvi_2691	0.13	-0.4
3,197,572	-		Echvi_2691	0.13	+0.4
3,197,574	+		Echvi_2691	0.13	-0.7
3,197,575	-		Echvi_2691	0.13	+1.7
3,197,575	-		Echvi_2691	0.13	+0.5
3,197,578	-		Echvi_2691	0.13	-2.7
3,197,578	-		Echvi_2691	0.13	-1.8
3,197,579	+		Echvi_2691	0.13	-0.4
3,197,579	+		Echvi_2691	0.13	+0.4
3,197,580	-		Echvi_2691	0.13	-0.1
3,197,580	-		Echvi_2691	0.13	-0.6
3,197,600	+		Echvi_2691	0.15	+0.8
3,197,601	-		Echvi_2691	0.15	+0.6
3,197,648	-		Echvi_2691	0.20	-1.4
3,197,751	-		Echvi_2691	0.30	-0.9
3,197,785	-		Echvi_2691	0.33	+0.3
3,197,841	+		Echvi_2691	0.38	-1.3
3,197,841	+		Echvi_2691	0.38	-0.6
3,197,856	+		Echvi_2691	0.39	+0.2
3,197,924	+		Echvi_2691	0.46	+0.4
3,197,925	-		Echvi_2691	0.46	-0.8
3,197,977	-		Echvi_2691	0.51	-2.2
3,197,980	-		Echvi_2691	0.51	-0.6
3,197,980	-		Echvi_2691	0.51	-0.4
3,197,983	+		Echvi_2691	0.51	-0.5
3,197,984	-		Echvi_2691	0.52	+1.0
3,198,047	+		Echvi_2691	0.57	+0.6
3,198,047	+		Echvi_2691	0.57	-1.1
3,198,048	-		Echvi_2691	0.58	+0.7
3,198,048	-		Echvi_2691	0.58	-0.7
3,198,048	-		Echvi_2691	0.58	+0.7
3,198,048	-		Echvi_2691	0.58	+1.7
3,198,052	+		Echvi_2691	0.58	+0.7
3,198,052	+		Echvi_2691	0.58	+0.3
3,198,052	+		Echvi_2691	0.58	-0.2
3,198,053	-		Echvi_2691	0.58	+0.4
3,198,089	+		Echvi_2691	0.61	-1.7
3,198,142	+		Echvi_2691	0.66	-0.7
3,198,188	+		Echvi_2691	0.71	+0.7
3,198,189	-		Echvi_2691	0.71	-0.6
3,198,223	-		Echvi_2691	0.74	-0.8
3,198,223	-		Echvi_2691	0.74	+0.4
3,198,224	+		Echvi_2691	0.74	-0.4
3,198,230	+		Echvi_2691	0.75	-0.8
3,198,231	-		Echvi_2691	0.75	-0.0
3,198,236	-		Echvi_2691	0.75	-1.4
3,198,246	+		Echvi_2691	0.76	+0.6
3,198,247	-		Echvi_2691	0.76	-0.6
3,198,282	-		Echvi_2691	0.80	+0.2
3,198,314	+		Echvi_2691	0.83	-0.4
3,198,314	+		Echvi_2691	0.83	-0.3
3,198,314	+		Echvi_2691	0.83	-0.4
3,198,315	-		Echvi_2691	0.83	-0.6
3,198,315	-		Echvi_2691	0.83	-1.8
3,198,370	-		Echvi_2691	0.88	-0.5
3,198,419	+				-1.8
3,198,419	+				-0.7
3,198,420	-				+0.6
3,198,422	+				-0.5
3,198,422	+				+0.4
3,198,444	+				-1.1
3,198,483	-				+0.2
3,198,492	+				+0.3
3,198,509	+				-0.9
3,198,510	-				+1.2
3,198,542	+				-0.8
3,198,557	+				+0.6
3,198,557	+				+0.1
3,198,557	+				-0.8
3,198,558	-				-1.8
3,198,579	-		Echvi_2692	0.11	-0.1
3,198,623	+		Echvi_2692	0.17	+0.3
3,198,624	-		Echvi_2692	0.17	+1.0
3,198,624	-		Echvi_2692	0.17	-0.9
3,198,635	+		Echvi_2692	0.19	+0.6
3,198,640	+		Echvi_2692	0.19	-0.6
3,198,649	+		Echvi_2692	0.21	-1.1
3,198,649	+		Echvi_2692	0.21	-2.3
3,198,666	-		Echvi_2692	0.23	-0.8
3,198,666	-		Echvi_2692	0.23	+2.6
3,198,666	-		Echvi_2692	0.23	-0.3
3,198,741	-		Echvi_2692	0.33	+0.4
3,198,741	-		Echvi_2692	0.33	+1.1
3,198,747	+		Echvi_2692	0.34	+1.1
3,198,747	+		Echvi_2692	0.34	-0.1
3,198,748	-		Echvi_2692	0.34	-0.1
3,198,748	-		Echvi_2692	0.34	-0.1
3,198,748	-		Echvi_2692	0.34	+1.3
3,198,840	-		Echvi_2692	0.46	-1.7
3,198,890	-		Echvi_2692	0.53	-1.4
3,198,972	+		Echvi_2692	0.64	+1.2
3,198,984	+		Echvi_2692	0.66	-1.3
3,199,040	+		Echvi_2692	0.73	+1.1
3,199,047	-		Echvi_2692	0.74	-1.3
3,199,048	+		Echvi_2692	0.74	+0.1
3,199,098	-		Echvi_2692	0.81	+0.6
3,199,098	-		Echvi_2692	0.81	+0.9
3,199,105	-		Echvi_2692	0.82	-1.0
3,199,137	-		Echvi_2692	0.86	-0.4
3,199,236	+				+0.2
3,199,297	+				-0.0
3,199,305	+				-0.6
3,199,324	+				-1.0
3,199,325	-				-1.0
3,199,327	+				-2.0
3,199,348	+				+1.2