Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2023

Experiment: m.b. nitrite 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrite 30 mM
2,379,474	-		Echvi_2022	0.29	-0.6
2,379,516	-		Echvi_2022	0.32	-0.4
2,379,570	-		Echvi_2022	0.37	-1.8
2,379,592	+		Echvi_2022	0.39	-1.3
2,379,662	-		Echvi_2022	0.46	+0.1
2,379,722	+		Echvi_2022	0.51	+0.4
2,379,729	-		Echvi_2022	0.52	-0.9
2,379,731	+		Echvi_2022	0.52	-0.4
2,379,757	+		Echvi_2022	0.55	+0.1
2,379,763	+		Echvi_2022	0.55	-0.7
2,379,773	-		Echvi_2022	0.56	+0.1
2,379,821	-		Echvi_2022	0.61	+0.0
2,379,834	+		Echvi_2022	0.62	-0.2
2,379,865	+		Echvi_2022	0.65	+0.2
2,379,866	-		Echvi_2022	0.65	+0.8
2,379,886	-		Echvi_2022	0.67	-0.6
2,379,886	-		Echvi_2022	0.67	-0.2
2,379,915	+		Echvi_2022	0.69	-0.8
2,379,916	-		Echvi_2022	0.69	-0.9
2,379,916	-		Echvi_2022	0.69	-0.5
2,380,010	+		Echvi_2022	0.78	+0.1
2,380,045	-		Echvi_2022	0.81	+0.4
2,380,073	+		Echvi_2022	0.84	-0.5
2,380,089	-		Echvi_2022	0.85	-0.6
2,380,146	+				+1.2
2,380,147	-				+0.7
2,380,148	+				+0.8
2,380,149	-				+0.5
2,380,149	-				-0.5
2,380,216	+				-2.7
2,380,217	-				-0.4
2,380,234	+				+0.2
2,380,234	+				+0.5
2,380,234	+				-0.1
2,380,284	-				+0.9
2,380,429	+				-0.2
2,380,459	+				-0.4
2,380,464	+				-1.9
2,380,464	+				+0.4
2,380,467	-				+0.4
2,380,484	+				+1.2
2,380,485	-				+0.5
2,380,666	-				-0.1
2,380,672	-				-0.2
2,380,672	-				+1.5
2,380,729	+				-0.5
2,380,730	-				+0.8
2,380,730	-				+0.6
2,380,821	+				+0.3
2,380,821	+				-1.0
2,380,822	-				-0.9
2,380,822	-				-0.6
2,380,887	+		Echvi_2023	0.10	-1.1
2,381,013	+		Echvi_2023	0.13	+0.3
2,381,013	+		Echvi_2023	0.13	-0.6
2,381,282	-		Echvi_2023	0.20	-0.1
2,381,282	-		Echvi_2023	0.20	-2.0
2,381,282	-		Echvi_2023	0.20	+1.1
2,381,282	-		Echvi_2023	0.20	+0.2
2,381,282	-		Echvi_2023	0.20	+0.5
2,381,337	+		Echvi_2023	0.21	-0.2
2,381,338	-		Echvi_2023	0.21	-1.3
2,381,375	+		Echvi_2023	0.22	+0.3
2,381,376	-		Echvi_2023	0.22	+0.9
2,381,647	-		Echvi_2023	0.29	-0.1
2,381,680	+		Echvi_2023	0.30	-1.2
2,381,681	-		Echvi_2023	0.30	+0.2
2,381,728	+		Echvi_2023	0.31	+1.9
2,381,728	+		Echvi_2023	0.31	-0.8
2,381,728	+		Echvi_2023	0.31	-0.9
2,381,827	+		Echvi_2023	0.33	+0.4
2,381,827	+		Echvi_2023	0.33	-1.0
2,381,828	-		Echvi_2023	0.33	-0.5
2,381,867	-		Echvi_2023	0.34	+0.9
2,381,892	-		Echvi_2023	0.35	-0.8
2,381,929	+		Echvi_2023	0.36	+0.3
2,381,930	-		Echvi_2023	0.36	-0.2
2,381,940	-		Echvi_2023	0.36	-1.7
2,382,063	+		Echvi_2023	0.39	+1.1
2,382,064	-		Echvi_2023	0.39	-0.1
2,382,154	+		Echvi_2023	0.41	+0.5
2,382,154	+		Echvi_2023	0.41	-1.4
2,382,155	-		Echvi_2023	0.41	-0.2
2,382,173	-		Echvi_2023	0.42	+1.5
2,382,176	-		Echvi_2023	0.42	+0.2
2,382,195	-		Echvi_2023	0.42	+1.6
2,382,272	+		Echvi_2023	0.44	-0.4
2,382,322	+		Echvi_2023	0.45	-0.9
2,382,323	-		Echvi_2023	0.45	+0.4
2,382,323	-		Echvi_2023	0.45	+0.1
2,382,323	-		Echvi_2023	0.45	+0.2
2,382,325	+		Echvi_2023	0.45	-1.8
2,382,325	+		Echvi_2023	0.45	-0.1
2,382,325	+		Echvi_2023	0.45	-0.9
2,382,326	-		Echvi_2023	0.45	-0.9
2,382,326	-		Echvi_2023	0.45	-0.8
2,382,365	-		Echvi_2023	0.46	-0.7
2,382,433	+		Echvi_2023	0.48	-0.2
2,382,483	-		Echvi_2023	0.49	-1.7
2,382,483	-		Echvi_2023	0.49	+0.6
2,382,483	-		Echvi_2023	0.49	-0.4
2,382,483	-		Echvi_2023	0.49	+0.9
2,382,528	-		Echvi_2023	0.50	-0.4
2,382,529	+		Echvi_2023	0.50	-0.0
2,382,570	-		Echvi_2023	0.51	-0.2
2,382,576	+		Echvi_2023	0.51	+0.0
2,382,663	+		Echvi_2023	0.54	-2.3
2,382,663	+		Echvi_2023	0.54	-0.1
2,382,742	-		Echvi_2023	0.55	+0.1
2,382,756	-		Echvi_2023	0.56	+1.0
2,382,781	+		Echvi_2023	0.56	+0.0
2,382,781	+		Echvi_2023	0.56	-0.9
2,382,781	+		Echvi_2023	0.56	+0.3
2,382,782	-		Echvi_2023	0.56	-2.1
2,382,782	-		Echvi_2023	0.56	-0.8
2,382,792	+		Echvi_2023	0.57	-0.9
2,382,792	+		Echvi_2023	0.57	-1.0
2,382,793	-		Echvi_2023	0.57	+0.2
2,382,981	-		Echvi_2023	0.61	-0.4
2,383,000	+		Echvi_2023	0.62	+0.9
2,383,000	+		Echvi_2023	0.62	-2.7
2,383,088	-		Echvi_2023	0.64	+0.2
2,383,202	-		Echvi_2023	0.67	-0.1
2,383,231	-		Echvi_2023	0.67	+0.0
2,383,231	-		Echvi_2023	0.67	+0.5
2,383,256	+		Echvi_2023	0.68	+0.4
2,383,328	+		Echvi_2023	0.70	-2.4
2,383,329	-		Echvi_2023	0.70	-0.7
2,383,371	+		Echvi_2023	0.71	+0.0
2,383,418	-		Echvi_2023	0.72	+0.1
2,383,435	+		Echvi_2023	0.72	+1.0
2,383,561	+		Echvi_2023	0.75	-0.1
2,383,561	+		Echvi_2023	0.75	-0.1
2,383,562	-		Echvi_2023	0.75	-0.0
2,383,572	-		Echvi_2023	0.76	+0.5
2,383,587	-		Echvi_2023	0.76	-0.5
2,383,826	+		Echvi_2023	0.82	-1.3
2,383,989	+		Echvi_2023	0.86	-0.5
2,384,005	+		Echvi_2023	0.86	-0.6
2,384,013	+		Echvi_2023	0.86	-0.1
2,384,013	+		Echvi_2023	0.86	+1.5
2,384,046	-		Echvi_2023	0.87	+1.1
2,384,046	-		Echvi_2023	0.87	-0.9
2,384,061	+		Echvi_2023	0.88	+0.0
2,384,062	-		Echvi_2023	0.88	-1.0
2,384,062	-		Echvi_2023	0.88	-1.3
2,384,105	+		Echvi_2023	0.89	+0.1
2,384,106	-		Echvi_2023	0.89	+0.8
2,384,106	-		Echvi_2023	0.89	-1.0
2,384,119	+		Echvi_2023	0.89	+0.2
2,384,119	+		Echvi_2023	0.89	-0.2
2,384,201	-				-1.0
2,384,201	-				+0.3
2,384,339	+				-1.0
2,384,342	+				+1.0
2,384,342	+				+1.6
2,384,355	+				-0.1
2,384,400	+				+1.1
2,384,404	+				+2.4
2,384,404	+				-0.4
2,384,404	+				-0.3
2,384,405	-				+0.2
2,384,447	+				-0.4
2,384,448	-				+0.4
2,384,463	+				+0.4
2,384,464	-				+0.6
2,384,490	+				+0.2
2,384,496	+				-1.1
2,384,496	+				+1.3
2,384,576	+				-0.7
2,384,577	-				+1.6
2,384,587	+				+0.9
2,384,588	-				-2.2
2,384,588	-				-0.2
2,384,588	-				-0.2
2,384,642	-				+0.3
2,384,713	+				-1.1
2,384,793	+				+0.1
2,384,794	-				-0.3
2,384,797	+				+0.6
2,384,797	+				+0.0
2,384,797	+				+0.9
2,384,798	-				+0.8
2,384,798	-				+0.7
2,384,798	-				+0.9
2,384,900	-		Echvi_2024	0.15	+0.1
2,384,919	-		Echvi_2024	0.16	-0.0
2,384,931	+		Echvi_2024	0.17	+1.2
2,384,932	-		Echvi_2024	0.17	-0.9
2,384,946	-		Echvi_2024	0.18	-1.0
2,384,998	-		Echvi_2024	0.22	+0.3
2,385,158	+		Echvi_2024	0.33	-2.5
2,385,384	-		Echvi_2024	0.49	+0.7
2,385,393	-		Echvi_2024	0.49	-0.6
2,385,397	-		Echvi_2024	0.50	+0.7
2,385,477	+		Echvi_2024	0.55	-0.1
2,385,478	-		Echvi_2024	0.55	+0.7
2,385,478	-		Echvi_2024	0.55	+0.6
2,385,555	+		Echvi_2024	0.61	+0.7